Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30615
         (547 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53337-6|AAA96188.2|  510|Caenorhabditis elegans Acetylcholine r...    29   2.2  
AF040661-12|AAG24221.1|  210|Caenorhabditis elegans Hypothetical...    29   2.9  
AL132846-3|CAB60346.2| 1648|Caenorhabditis elegans Hypothetical ...    28   5.0  
Z70037-4|CAA93877.1|  146|Caenorhabditis elegans Hypothetical pr...    27   8.8  
Z36282-2|CAA85288.3|  240|Caenorhabditis elegans Hypothetical pr...    27   8.8  
AF040661-11|AAG24210.1|  211|Caenorhabditis elegans Hypothetical...    27   8.8  

>U53337-6|AAA96188.2|  510|Caenorhabditis elegans Acetylcholine
           receptor protein 10 protein.
          Length = 510

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = +1

Query: 268 RVSHSKRETRRRSPFGSRRSMLSVFFLTRASRLRSPDITQFD 393
           R S S++++RRR+    RR ++    + ++  LRS   TQF+
Sbjct: 378 RTSSSRQKSRRRNSKSQRRPLVLTKNVNKSHSLRSRRFTQFE 419


>AF040661-12|AAG24221.1|  210|Caenorhabditis elegans Hypothetical
           protein W10G11.14 protein.
          Length = 210

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 22/84 (26%), Positives = 34/84 (40%)
 Frame = +2

Query: 86  EPQFRTFGSCTRPSGRWCELPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQLTLL 265
           EP ++ F    RPSG WC    AG     + AE S    G  +  ++ +      Q  LL
Sbjct: 41  EPGWKFFN---RPSGGWCMRVFAGFNAKKADAEKSCQAVGSTLSGIQNKNEALYIQTALL 97

Query: 266 VAFRIQNARRDVEAHLDRGDRCYR 337
              +I  +   V   + R  +C +
Sbjct: 98  A--QIPQSSGSVWIGIQRTQKCLK 119


>AL132846-3|CAB60346.2| 1648|Caenorhabditis elegans Hypothetical
            protein Y43D4A.5 protein.
          Length = 1648

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = -2

Query: 243  PPDSRGSTVSISLPDSARLASALEAFRHNPAD-GSSHHRPLGRVHEPNVRNCGSSR 79
            PP S  S V+ + P   +    +E+  H PAD GS    PLG    P  R  G+ +
Sbjct: 868  PPGSASSMVAHTAPGPLKSHRNVES-GHAPADFGSGSVEPLGSPPGPQTRPIGTGQ 922


>Z70037-4|CAA93877.1|  146|Caenorhabditis elegans Hypothetical
           protein T27D12.3 protein.
          Length = 146

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +2

Query: 119 RPSGRWCELPSAGLCLNASKAEAS 190
           RPSG WC     GL L  ++ EAS
Sbjct: 35  RPSGPWCVKLFVGLYLQGNRNEAS 58


>Z36282-2|CAA85288.3|  240|Caenorhabditis elegans Hypothetical
           protein K10G9.2 protein.
          Length = 240

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
 Frame = -2

Query: 330 HRSPRSKWASTSRLAF*MRNATSKVNCLEPPDSRGSTVSISLPDSA-----RLASALEAF 166
           HR   S     SR+   + +   + N L   + +G ++S+SLP SA     R  +  +AF
Sbjct: 104 HRHSASGSRRQSRVYSNLHSKRKRSNSLTNYN-KGQSLSVSLPPSARHTPHRFVNEEDAF 162

Query: 165 RHNPADGSSH 136
           R++ A   SH
Sbjct: 163 RNSMASSDSH 172


>AF040661-11|AAG24210.1|  211|Caenorhabditis elegans Hypothetical
           protein W10G11.15 protein.
          Length = 211

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 19/73 (26%), Positives = 28/73 (38%)
 Frame = +2

Query: 119 RPSGRWCELPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQLTLLVAFRIQNARRD 298
           RPSG WC     G     + AE S    G  +  ++ R      Q  LL   +I  +   
Sbjct: 49  RPSGGWCMRVFEGFNAAKTDAEKSCKSVGSTLSGIQNRNEALYIQTALLA--QIARSSGS 106

Query: 299 VEAHLDRGDRCYR 337
           V   + R  +C +
Sbjct: 107 VWVGMQRTQKCLK 119


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,047,594
Number of Sequences: 27780
Number of extensions: 253732
Number of successful extensions: 830
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)