Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30615
         (547 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g26190.1 68417.m03770 expressed protein                             28   3.5  
At5g05920.1 68418.m00654 deoxyhypusine synthase almost identical...    28   4.7  
At1g67970.1 68414.m07764 heat shock factor protein, putative (HS...    27   6.2  
At5g42710.1 68418.m05202 hypothetical protein                          27   8.2  
At1g14740.1 68414.m01762 expressed protein                             27   8.2  

>At4g26190.1 68417.m03770 expressed protein
          Length = 1067

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = +3

Query: 279  FKTRDATSKPIWIAEIDAIGFFLNTCITAPKSGYN 383
            FKT++   KP+++ ++  +   + TCI+  K  Y+
Sbjct: 944  FKTQEKKDKPLFLKDLRRVWDHIGTCISCGKRKYD 978


>At5g05920.1 68418.m00654 deoxyhypusine synthase almost identical to
           deoxyhypusine synthase GI:15431345 from [Arabidopsis
           thaliana]
          Length = 368

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = -3

Query: 503 ITWRRAESQQIAARRCSTEHNTPPGTEVVY-RLFRAPTSN*VISGLR 366
           + WR A+   +A   CS E   P   E V  ++F   TSN V SG+R
Sbjct: 67  LDWRLADETTVA-EDCSEEEKNPSFRESVKCKIFLGFTSNLVSSGVR 112


>At1g67970.1 68414.m07764 heat shock factor protein, putative (HSF5)
           / heat shock transcription factor, putative (HSTF5)
           identical to heat shock transcription factor 5 (HSF5)
           SP:Q9S7U5 from [Arabidopsis thaliana]; contains Pfam
           profile: PF00447 HSF-type DNA-binding domain
          Length = 374

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +2

Query: 128 GRWCELPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQL 256
           G W +L         +K + ++ + GKD LT+E  E  G+ +L
Sbjct: 286 GAWEKLLLLSPSRKKTKKQENIVKKGKDDLTLEEEEEDGTMEL 328


>At5g42710.1 68418.m05202 hypothetical protein 
          Length = 807

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
 Frame = -2

Query: 240 PDSRGSTVSISLPDSARLASALE-AFRHNPADGSSHHRPLGRVHEPNVRNCGSSRTEQYY 64
           P  +G ++   L  S  LA ALE A +    D S     +  +HE   R+ G +R+ Q +
Sbjct: 75  PYGKGKSME-KLDLSKALAFALENAGKATRVDPSGSASIISFLHEVGRRSLGETRSSQVF 133

Query: 63  YRNDKPS 43
            +  +PS
Sbjct: 134 VQQQQPS 140


>At1g14740.1 68414.m01762 expressed protein
          Length = 733

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = +2

Query: 68  YCSVREEPQFRTFGSCTRP-SGRWCELPSAGLCLNASKAEASLAESGKDMLTVEPRESGG 244
           + +VR       F S + P SG   EL  + LC N+ K   SL + GK+++T     S  
Sbjct: 46  FLNVRSNNLDGGFSSKSSPRSGN--ELTLSYLCENSGKLAESLGQKGKEVVTFSENSSYD 103

Query: 245 SK 250
            K
Sbjct: 104 DK 105


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,473,665
Number of Sequences: 28952
Number of extensions: 242592
Number of successful extensions: 613
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1023490624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)