Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30613
         (576 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...    99   5e-22
SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyc...    25   7.9  
SPAC1851.03 |ckb1||CK2 family regulatory subunit |Schizosaccharo...    25   7.9  

>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 98.7 bits (235), Expect = 5e-22
 Identities = 40/84 (47%), Positives = 59/84 (70%)
 Frame = +3

Query: 243 FPASLCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNE 422
           F  +LC+KMGVPY IVK K+RLG ++H+KT   LA+T V   D+   + +V A+  NF+ 
Sbjct: 165 FLPALCKKMGVPYAIVKNKARLGTVIHQKTAAVLAVTEVREEDKNELASIVSAVDANFSA 224

Query: 423 RYEELRKHWGGGVLGNKSNARIAK 494
           +Y+E R+ WGGG++G K+ A +AK
Sbjct: 225 KYDESRRKWGGGIMGGKTQALLAK 248



 Score = 37.5 bits (83), Expect = 0.001
 Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
 Frame = +2

Query: 2   DKTTAKGLFKILEKYRPET-XXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKL 178
           DK TA  +FK+L KYRPET                          +P  ++ G N V  L
Sbjct: 83  DKNTATQVFKLLNKYRPETAAEKKQRLVAEAEAVANGKSAQDVSKKPYNVKYGLNHVVAL 142

Query: 179 VEKKKAHL 202
           +E KKA L
Sbjct: 143 IEAKKAKL 150



 Score = 36.7 bits (81), Expect = 0.002
 Identities = 17/27 (62%), Positives = 21/27 (77%)
 Frame = +1

Query: 187 EEGALVVIAHDVDPIELVLFLPAYAVK 267
           ++  LV+IA DVDPIELV+FLPA   K
Sbjct: 146 KKAKLVLIASDVDPIELVVFLPALCKK 172


>SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 372

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +2

Query: 278 ILHCQGQVPPRCTCTPQDMHMLSSNKC 358
           +LHC  +   RC C P+++ + S++ C
Sbjct: 333 LLHCPRK--GRCFCKPEEIDLSSNSSC 357


>SPAC1851.03 |ckb1||CK2 family regulatory subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 9/13 (69%), Positives = 13/13 (100%)
 Frame = +2

Query: 11  TAKGLFKILEKYR 49
           TA+GL+K+LEKY+
Sbjct: 94  TAQGLYKMLEKYK 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,815,716
Number of Sequences: 5004
Number of extensions: 31591
Number of successful extensions: 97
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)