Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30613
(576 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894... 117 8e-27
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 116 1e-26
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341... 79 3e-15
06_01_1127 + 9294079-9294193,9294300-9294369,9294611-9294716,929... 32 0.38
02_05_0610 - 30342105-30342266,30343024-30343129,30343788-303438... 28 6.1
11_01_0321 + 2415799-2415972,2418060-2418351,2418757-2419610 27 8.1
06_03_1339 + 29445324-29445395,29445487-29445598,29445673-294457... 27 8.1
05_03_0629 + 16376575-16376689,16376792-16376839,16376927-163770... 27 8.1
>09_04_0677 -
19388888-19389019,19389124-19389216,19389317-19389445,
19389559-19389728,19390280-19390481,19390576-19390623,
19390797-19390799
Length = 258
Score = 117 bits (281), Expect = 8e-27
Identities = 48/78 (61%), Positives = 67/78 (85%)
Frame = +3
Query: 252 SLCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYE 431
+LCRKM VPYCIVKGK+RLG++VH+KT + L LT V++ D+ FSK++EAIK NFN++++
Sbjct: 164 ALCRKMEVPYCIVKGKARLGSIVHKKTASVLCLTTVKNEDKLEFSKILEAIKANFNDKFD 223
Query: 432 ELRKHWGGGVLGNKSNAR 485
E+RK WGGGV+G+KS A+
Sbjct: 224 EVRKKWGGGVMGSKSQAK 241
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/28 (64%), Positives = 22/28 (78%)
Frame = +1
Query: 184 EEEGALVVIAHDVDPIELVLFLPAYAVK 267
+ + LVVIAHDVDPIELV++LPA K
Sbjct: 141 QSKAQLVVIAHDVDPIELVVWLPALCRK 168
Score = 33.9 bits (74), Expect = 0.093
Identities = 22/67 (32%), Positives = 28/67 (41%)
Frame = +2
Query: 2 DKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLV 181
DK A LFK+L KYRPE +P ++ G N VT L+
Sbjct: 81 DKNLATNLFKMLLKYRPE-DKAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLI 139
Query: 182 EKKKAHL 202
E+ KA L
Sbjct: 140 EQSKAQL 146
>01_07_0018 -
40488702-40488833,40488928-40489020,40489125-40489253,
40489379-40489500,40490292-40490544,40490636-40490638
Length = 243
Score = 116 bits (280), Expect = 1e-26
Identities = 46/78 (58%), Positives = 68/78 (87%)
Frame = +3
Query: 252 SLCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYE 431
+LCRKM +PYCIVKGK+RLG++VH+KT + L LT V++ D+ FSK++EAIK+NFN++++
Sbjct: 149 ALCRKMEIPYCIVKGKARLGSIVHKKTASVLCLTTVKNEDKLEFSKILEAIKSNFNDKFD 208
Query: 432 ELRKHWGGGVLGNKSNAR 485
E+RK WGGG++G+KS A+
Sbjct: 209 EVRKKWGGGIMGSKSQAK 226
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/28 (64%), Positives = 22/28 (78%)
Frame = +1
Query: 184 EEEGALVVIAHDVDPIELVLFLPAYAVK 267
+ + LVVIAHDVDPIELV++LPA K
Sbjct: 126 QSKAQLVVIAHDVDPIELVVWLPALCRK 153
>08_02_0211 -
14333553-14333684,14333795-14333887,14334019-14334105,
14334220-14334389,14334985-14335186,14335604-14335606
Length = 228
Score = 79.0 bits (186), Expect = 3e-15
Identities = 31/57 (54%), Positives = 47/57 (82%)
Frame = +3
Query: 315 LVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEELRKHWGGGVLGNKSNAR 485
+VH+KT + L LT V++ D+ FSK++EAIK NFN++++E+RK WGGGV+G+KS A+
Sbjct: 155 IVHKKTASVLCLTTVKNEDKLEFSKILEAIKANFNDKFDEVRKKWGGGVMGSKSQAK 211
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/28 (64%), Positives = 22/28 (78%)
Frame = +1
Query: 184 EEEGALVVIAHDVDPIELVLFLPAYAVK 267
+ + LVVIAHDVDPIELV++LPA K
Sbjct: 125 QSKAQLVVIAHDVDPIELVVWLPALCRK 152
Score = 33.9 bits (74), Expect = 0.093
Identities = 22/67 (32%), Positives = 28/67 (41%)
Frame = +2
Query: 2 DKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLV 181
DK A LFK+L KYRPE +P ++ G N VT L+
Sbjct: 65 DKNLATNLFKMLLKYRPE-DKAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLI 123
Query: 182 EKKKAHL 202
E+ KA L
Sbjct: 124 EQSKAQL 130
>06_01_1127 +
9294079-9294193,9294300-9294369,9294611-9294716,
9295665-9295805,9296377-9296475
Length = 176
Score = 31.9 bits (69), Expect = 0.38
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Frame = +3
Query: 255 LCRKMGVPYCIVKGKSRL--GALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNERY 428
LC + +PY V K L R TC L LT G+ V E +KT++++
Sbjct: 82 LCEEANIPYVYVPSKEDLATAGTTKRPTCCVLVLTKPAKGELE--EDVKEKLKTDYDQVM 139
Query: 429 EELRKHWGG 455
E+ + G
Sbjct: 140 SEVAEAGNG 148
>02_05_0610 -
30342105-30342266,30343024-30343129,30343788-30343857,
30343978-30344092
Length = 150
Score = 27.9 bits (59), Expect = 6.1
Identities = 15/61 (24%), Positives = 25/61 (40%)
Frame = +3
Query: 255 LCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEE 434
LC + +PY V K L K TC L + +V E +K++++ E
Sbjct: 82 LCEEANIPYIYVPSKEDLATAGTTKRPTCCVLVMTKPAKGEINEEVKEKLKSDYDHVVAE 141
Query: 435 L 437
+
Sbjct: 142 V 142
>11_01_0321 + 2415799-2415972,2418060-2418351,2418757-2419610
Length = 439
Score = 27.5 bits (58), Expect = 8.1
Identities = 18/78 (23%), Positives = 31/78 (39%)
Frame = -3
Query: 472 LLPRTPPPQCLRSSS*RSLKFVLMASTTFEKEARSPDSTFVRAKHVHVLRCTSAPRRDLP 293
LL PP + S R ++ + + R P+ + A +R T D P
Sbjct: 21 LLSLPPPSLAVTSPYVRPKPRATLSLLKDDDDGRKPEQVHISAVGSDKMRVTWITGGDAP 80
Query: 292 LTMQYGTPILRHKLAGKG 239
T++YGT ++ + G
Sbjct: 81 ATVEYGTTSGQYPFSATG 98
>06_03_1339 +
29445324-29445395,29445487-29445598,29445673-29445756,
29446156-29446182,29446879-29446966,29447070-29447151,
29447414-29447434,29448412-29448605,29449419-29449560,
29449805-29449889,29450123-29450250,29450940-29451032,
29451095-29451327,29453384-29453564,29454122-29454169
Length = 529
Score = 27.5 bits (58), Expect = 8.1
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Frame = +2
Query: 146 IRSGTNTVTKLVEKKKA--HLWSSLMMLIPLSWSFSCQLMP*NGRTILHCQGQVPPRCTC 319
++ GT T K V+K+KA L ++ML P S SC + + +LH +P C
Sbjct: 230 LKIGTGTA-KYVDKRKAKGQLVEVVIMLAPTSSDLSCWMTNCSSTQVLHFVEFIP--CPI 286
Query: 320 TPQDMHMLSS 349
+ + L S
Sbjct: 287 SQSSLSALMS 296
>05_03_0629 +
16376575-16376689,16376792-16376839,16376927-16377012,
16377791-16377878,16378387-16378472,16378604-16378690,
16379111-16379293,16379387-16379470,16379590-16379651,
16379752-16379827,16379906-16379968,16380060-16380141,
16380840-16380916,16381502-16381549,16381681-16381743
Length = 415
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -3
Query: 463 RTPPPQCLRSSS*RSLKFVLMASTTFEKEARSPD 362
R+PPP LR + R + V A T E +A +P+
Sbjct: 28 RSPPPSSLRLNRRRHFQVVRAAETDKETKANAPE 61
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,853,332
Number of Sequences: 37544
Number of extensions: 253926
Number of successful extensions: 822
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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