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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30613
         (576 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)       117   8e-27
SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)             117   8e-27
SB_56418| Best HMM Match : Peptidase_A17 (HMM E-Value=1.3e-35)         30   1.2  
SB_7961| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.6  
SB_6211| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.7  
SB_38146| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_54844| Best HMM Match : Microvir_J (HMM E-Value=1.7)                28   4.8  
SB_21511| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.74)           28   4.8  
SB_48160| Best HMM Match : Cytochrom_C (HMM E-Value=1.8e-05)           28   4.8  
SB_45519| Best HMM Match : RNB (HMM E-Value=1.6e-35)                   27   8.3  

>SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)
          Length = 172

 Score =  117 bits (281), Expect = 8e-27
 Identities = 48/83 (57%), Positives = 66/83 (79%)
 Frame = +3

Query: 252 SLCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYE 431
           +LCRKM VPYCIVKGK+RLG +VH+K  T L +T V   D+ S + ++E++KTN+NER++
Sbjct: 81  ALCRKMQVPYCIVKGKARLGKVVHKKNATALCITGVRQEDKNSLNNLIESVKTNYNERFD 140

Query: 432 ELRKHWGGGVLGNKSNARIAKLE 500
           E+RKHWGGG++G KS A  AK+E
Sbjct: 141 EIRKHWGGGIMGPKSLAATAKVE 163



 Score = 39.1 bits (87), Expect = 0.003
 Identities = 21/60 (35%), Positives = 26/60 (43%)
 Frame = +2

Query: 23  LFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVEKKKAHL 202
           LFK+L KYRPET                         +P  ++ G N +T LVE KKA L
Sbjct: 4   LFKLLHKYRPETKAEKKARLSAKAEKKAEGKEEAPGKKPMLVKYGINHITSLVENKKAQL 63



 Score = 38.3 bits (85), Expect = 0.004
 Identities = 17/27 (62%), Positives = 22/27 (81%)
 Frame = +1

Query: 187 EEGALVVIAHDVDPIELVLFLPAYAVK 267
           ++  LVVIAHDVDPIE+V++LPA   K
Sbjct: 59  KKAQLVVIAHDVDPIEIVVWLPALCRK 85


>SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 263

 Score =  117 bits (281), Expect = 8e-27
 Identities = 48/83 (57%), Positives = 66/83 (79%)
 Frame = +3

Query: 252 SLCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYE 431
           +LCRKM VPYCIVKGK+RLG +VH+K  T L +T V   D+ S + ++E++KTN+NER++
Sbjct: 172 ALCRKMQVPYCIVKGKARLGKVVHKKNATALCITGVRQEDKNSLNNLIESVKTNYNERFD 231

Query: 432 ELRKHWGGGVLGNKSNARIAKLE 500
           E+RKHWGGG++G KS A  AK+E
Sbjct: 232 EIRKHWGGGIMGPKSLAATAKVE 254



 Score = 40.7 bits (91), Expect = 8e-04
 Identities = 22/67 (32%), Positives = 29/67 (43%)
 Frame = +2

Query: 2   DKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLV 181
           D+ +   LFK+L KYRPET                         +P  ++ G N +T LV
Sbjct: 88  DRQSTVQLFKLLHKYRPETKAEKKARLSAKAEKKAEGKEEAPGKKPMLVKYGINHITSLV 147

Query: 182 EKKKAHL 202
           E KKA L
Sbjct: 148 ENKKAQL 154



 Score = 38.3 bits (85), Expect = 0.004
 Identities = 17/27 (62%), Positives = 22/27 (81%)
 Frame = +1

Query: 187 EEGALVVIAHDVDPIELVLFLPAYAVK 267
           ++  LVVIAHDVDPIE+V++LPA   K
Sbjct: 150 KKAQLVVIAHDVDPIEIVVWLPALCRK 176


>SB_56418| Best HMM Match : Peptidase_A17 (HMM E-Value=1.3e-35)
          Length = 1898

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/60 (25%), Positives = 33/60 (55%)
 Frame = +3

Query: 258  CRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEEL 437
            C++    + +++GK +  AL+ +KT   L +  V    R S + VV+   ++ +E+Y ++
Sbjct: 1208 CKRCRDEFTVIRGKEK--ALLGKKTAEQLKVLGVGPETRESVNAVVKGSDSDIHEQYSDI 1265


>SB_7961| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1957

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 19/50 (38%), Positives = 27/50 (54%)
 Frame = +3

Query: 288  VKGKSRLGALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEEL 437
            VKGK+ LG    +KT   L +  V    R S S VVEA  ++  E+Y ++
Sbjct: 1092 VKGKALLG----KKTAEQLKVLRVGPETRESVSAVVEASDSDIREQYSDI 1137


>SB_6211| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 490

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 16/53 (30%), Positives = 29/53 (54%)
 Frame = +3

Query: 279 YCIVKGKSRLGALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEEL 437
           + +++GK +  AL+ +KT   L +  V      S S VVEA  ++  E+Y ++
Sbjct: 338 FTVIRGKGK--ALLGKKTAEQLKVLRVGPETGESVSAVVEASDSDIREQYSDI 388


>SB_38146| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 136

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 15/61 (24%), Positives = 31/61 (50%)
 Frame = +1

Query: 157 HKHSHQAGREEEGALVVIAHDVDPIELVLFLPAYAVKWAYHTALSRASPASVHLYTARHA 336
           H+ + +  R+ E   ++    V  I L+  +  +   W+Y  AL+  SPA+V++ ++   
Sbjct: 50  HEATEELARQAEKMSLL---QVAKIALMFCILWFLATWSYQEALNDTSPAAVNILSSSSG 106

Query: 337 H 339
           H
Sbjct: 107 H 107


>SB_54844| Best HMM Match : Microvir_J (HMM E-Value=1.7)
          Length = 189

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = -3

Query: 463 RTPPPQCLRSSS*RSLKFVLMASTTFEKEARSPDST 356
           R    + +RS S RSL   L  ST+ EKEA+  D+T
Sbjct: 113 RVRKKEIIRSGSSRSLPECLRISTSKEKEAKDIDNT 148


>SB_21511| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.74)
          Length = 437

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -3

Query: 388 FEKEARSPDSTFVRAKHVHVLRCTSAPRRDLPLT 287
           F     + +S   R +H H+ RCTSAP    P T
Sbjct: 61  FNNFTNTTESWPQRKRHFHLRRCTSAPEPSSPNT 94


>SB_48160| Best HMM Match : Cytochrom_C (HMM E-Value=1.8e-05)
          Length = 212

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 136 PLWWRLIFLGNLSFSSFPQPLFPG 65
           P WW ++F+G + FS     L+PG
Sbjct: 56  PKWWFMLFIGTIVFSIGYLVLYPG 79


>SB_45519| Best HMM Match : RNB (HMM E-Value=1.6e-35)
          Length = 2748

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +3

Query: 369 DRASFSKVVEAIKTNFNERYEELRKHWGG 455
           DRAS+  + EA + +  ER EEL K W G
Sbjct: 635 DRASYYNMAEAAEVS--ERVEELVKQWRG 661


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,197,244
Number of Sequences: 59808
Number of extensions: 265408
Number of successful extensions: 785
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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