BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV30613 (576 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24) 117 8e-27 SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.) 117 8e-27 SB_56418| Best HMM Match : Peptidase_A17 (HMM E-Value=1.3e-35) 30 1.2 SB_7961| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6 SB_6211| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7 SB_38146| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6 SB_54844| Best HMM Match : Microvir_J (HMM E-Value=1.7) 28 4.8 SB_21511| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.74) 28 4.8 SB_48160| Best HMM Match : Cytochrom_C (HMM E-Value=1.8e-05) 28 4.8 SB_45519| Best HMM Match : RNB (HMM E-Value=1.6e-35) 27 8.3 >SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24) Length = 172 Score = 117 bits (281), Expect = 8e-27 Identities = 48/83 (57%), Positives = 66/83 (79%) Frame = +3 Query: 252 SLCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYE 431 +LCRKM VPYCIVKGK+RLG +VH+K T L +T V D+ S + ++E++KTN+NER++ Sbjct: 81 ALCRKMQVPYCIVKGKARLGKVVHKKNATALCITGVRQEDKNSLNNLIESVKTNYNERFD 140 Query: 432 ELRKHWGGGVLGNKSNARIAKLE 500 E+RKHWGGG++G KS A AK+E Sbjct: 141 EIRKHWGGGIMGPKSLAATAKVE 163 Score = 39.1 bits (87), Expect = 0.003 Identities = 21/60 (35%), Positives = 26/60 (43%) Frame = +2 Query: 23 LFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVEKKKAHL 202 LFK+L KYRPET +P ++ G N +T LVE KKA L Sbjct: 4 LFKLLHKYRPETKAEKKARLSAKAEKKAEGKEEAPGKKPMLVKYGINHITSLVENKKAQL 63 Score = 38.3 bits (85), Expect = 0.004 Identities = 17/27 (62%), Positives = 22/27 (81%) Frame = +1 Query: 187 EEGALVVIAHDVDPIELVLFLPAYAVK 267 ++ LVVIAHDVDPIE+V++LPA K Sbjct: 59 KKAQLVVIAHDVDPIEIVVWLPALCRK 85 >SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 263 Score = 117 bits (281), Expect = 8e-27 Identities = 48/83 (57%), Positives = 66/83 (79%) Frame = +3 Query: 252 SLCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYE 431 +LCRKM VPYCIVKGK+RLG +VH+K T L +T V D+ S + ++E++KTN+NER++ Sbjct: 172 ALCRKMQVPYCIVKGKARLGKVVHKKNATALCITGVRQEDKNSLNNLIESVKTNYNERFD 231 Query: 432 ELRKHWGGGVLGNKSNARIAKLE 500 E+RKHWGGG++G KS A AK+E Sbjct: 232 EIRKHWGGGIMGPKSLAATAKVE 254 Score = 40.7 bits (91), Expect = 8e-04 Identities = 22/67 (32%), Positives = 29/67 (43%) Frame = +2 Query: 2 DKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLV 181 D+ + LFK+L KYRPET +P ++ G N +T LV Sbjct: 88 DRQSTVQLFKLLHKYRPETKAEKKARLSAKAEKKAEGKEEAPGKKPMLVKYGINHITSLV 147 Query: 182 EKKKAHL 202 E KKA L Sbjct: 148 ENKKAQL 154 Score = 38.3 bits (85), Expect = 0.004 Identities = 17/27 (62%), Positives = 22/27 (81%) Frame = +1 Query: 187 EEGALVVIAHDVDPIELVLFLPAYAVK 267 ++ LVVIAHDVDPIE+V++LPA K Sbjct: 150 KKAQLVVIAHDVDPIEIVVWLPALCRK 176 >SB_56418| Best HMM Match : Peptidase_A17 (HMM E-Value=1.3e-35) Length = 1898 Score = 30.3 bits (65), Expect = 1.2 Identities = 15/60 (25%), Positives = 33/60 (55%) Frame = +3 Query: 258 CRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEEL 437 C++ + +++GK + AL+ +KT L + V R S + VV+ ++ +E+Y ++ Sbjct: 1208 CKRCRDEFTVIRGKEK--ALLGKKTAEQLKVLGVGPETRESVNAVVKGSDSDIHEQYSDI 1265 >SB_7961| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1957 Score = 29.9 bits (64), Expect = 1.6 Identities = 19/50 (38%), Positives = 27/50 (54%) Frame = +3 Query: 288 VKGKSRLGALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEEL 437 VKGK+ LG +KT L + V R S S VVEA ++ E+Y ++ Sbjct: 1092 VKGKALLG----KKTAEQLKVLRVGPETRESVSAVVEASDSDIREQYSDI 1137 >SB_6211| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 490 Score = 29.1 bits (62), Expect = 2.7 Identities = 16/53 (30%), Positives = 29/53 (54%) Frame = +3 Query: 279 YCIVKGKSRLGALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEEL 437 + +++GK + AL+ +KT L + V S S VVEA ++ E+Y ++ Sbjct: 338 FTVIRGKGK--ALLGKKTAEQLKVLRVGPETGESVSAVVEASDSDIREQYSDI 388 >SB_38146| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 136 Score = 28.7 bits (61), Expect = 3.6 Identities = 15/61 (24%), Positives = 31/61 (50%) Frame = +1 Query: 157 HKHSHQAGREEEGALVVIAHDVDPIELVLFLPAYAVKWAYHTALSRASPASVHLYTARHA 336 H+ + + R+ E ++ V I L+ + + W+Y AL+ SPA+V++ ++ Sbjct: 50 HEATEELARQAEKMSLL---QVAKIALMFCILWFLATWSYQEALNDTSPAAVNILSSSSG 106 Query: 337 H 339 H Sbjct: 107 H 107 >SB_54844| Best HMM Match : Microvir_J (HMM E-Value=1.7) Length = 189 Score = 28.3 bits (60), Expect = 4.8 Identities = 16/36 (44%), Positives = 21/36 (58%) Frame = -3 Query: 463 RTPPPQCLRSSS*RSLKFVLMASTTFEKEARSPDST 356 R + +RS S RSL L ST+ EKEA+ D+T Sbjct: 113 RVRKKEIIRSGSSRSLPECLRISTSKEKEAKDIDNT 148 >SB_21511| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.74) Length = 437 Score = 28.3 bits (60), Expect = 4.8 Identities = 13/34 (38%), Positives = 17/34 (50%) Frame = -3 Query: 388 FEKEARSPDSTFVRAKHVHVLRCTSAPRRDLPLT 287 F + +S R +H H+ RCTSAP P T Sbjct: 61 FNNFTNTTESWPQRKRHFHLRRCTSAPEPSSPNT 94 >SB_48160| Best HMM Match : Cytochrom_C (HMM E-Value=1.8e-05) Length = 212 Score = 28.3 bits (60), Expect = 4.8 Identities = 10/24 (41%), Positives = 15/24 (62%) Frame = -3 Query: 136 PLWWRLIFLGNLSFSSFPQPLFPG 65 P WW ++F+G + FS L+PG Sbjct: 56 PKWWFMLFIGTIVFSIGYLVLYPG 79 >SB_45519| Best HMM Match : RNB (HMM E-Value=1.6e-35) Length = 2748 Score = 27.5 bits (58), Expect = 8.3 Identities = 14/29 (48%), Positives = 18/29 (62%) Frame = +3 Query: 369 DRASFSKVVEAIKTNFNERYEELRKHWGG 455 DRAS+ + EA + + ER EEL K W G Sbjct: 635 DRASYYNMAEAAEVS--ERVEELVKQWRG 661 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,197,244 Number of Sequences: 59808 Number of extensions: 265408 Number of successful extensions: 785 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 730 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 782 length of database: 16,821,457 effective HSP length: 78 effective length of database: 12,156,433 effective search space used: 1373676929 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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