Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30613
(576 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24) 117 8e-27
SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.) 117 8e-27
SB_56418| Best HMM Match : Peptidase_A17 (HMM E-Value=1.3e-35) 30 1.2
SB_7961| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_6211| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_38146| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_54844| Best HMM Match : Microvir_J (HMM E-Value=1.7) 28 4.8
SB_21511| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.74) 28 4.8
SB_48160| Best HMM Match : Cytochrom_C (HMM E-Value=1.8e-05) 28 4.8
SB_45519| Best HMM Match : RNB (HMM E-Value=1.6e-35) 27 8.3
>SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)
Length = 172
Score = 117 bits (281), Expect = 8e-27
Identities = 48/83 (57%), Positives = 66/83 (79%)
Frame = +3
Query: 252 SLCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYE 431
+LCRKM VPYCIVKGK+RLG +VH+K T L +T V D+ S + ++E++KTN+NER++
Sbjct: 81 ALCRKMQVPYCIVKGKARLGKVVHKKNATALCITGVRQEDKNSLNNLIESVKTNYNERFD 140
Query: 432 ELRKHWGGGVLGNKSNARIAKLE 500
E+RKHWGGG++G KS A AK+E
Sbjct: 141 EIRKHWGGGIMGPKSLAATAKVE 163
Score = 39.1 bits (87), Expect = 0.003
Identities = 21/60 (35%), Positives = 26/60 (43%)
Frame = +2
Query: 23 LFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVEKKKAHL 202
LFK+L KYRPET +P ++ G N +T LVE KKA L
Sbjct: 4 LFKLLHKYRPETKAEKKARLSAKAEKKAEGKEEAPGKKPMLVKYGINHITSLVENKKAQL 63
Score = 38.3 bits (85), Expect = 0.004
Identities = 17/27 (62%), Positives = 22/27 (81%)
Frame = +1
Query: 187 EEGALVVIAHDVDPIELVLFLPAYAVK 267
++ LVVIAHDVDPIE+V++LPA K
Sbjct: 59 KKAQLVVIAHDVDPIEIVVWLPALCRK 85
>SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 263
Score = 117 bits (281), Expect = 8e-27
Identities = 48/83 (57%), Positives = 66/83 (79%)
Frame = +3
Query: 252 SLCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYE 431
+LCRKM VPYCIVKGK+RLG +VH+K T L +T V D+ S + ++E++KTN+NER++
Sbjct: 172 ALCRKMQVPYCIVKGKARLGKVVHKKNATALCITGVRQEDKNSLNNLIESVKTNYNERFD 231
Query: 432 ELRKHWGGGVLGNKSNARIAKLE 500
E+RKHWGGG++G KS A AK+E
Sbjct: 232 EIRKHWGGGIMGPKSLAATAKVE 254
Score = 40.7 bits (91), Expect = 8e-04
Identities = 22/67 (32%), Positives = 29/67 (43%)
Frame = +2
Query: 2 DKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLV 181
D+ + LFK+L KYRPET +P ++ G N +T LV
Sbjct: 88 DRQSTVQLFKLLHKYRPETKAEKKARLSAKAEKKAEGKEEAPGKKPMLVKYGINHITSLV 147
Query: 182 EKKKAHL 202
E KKA L
Sbjct: 148 ENKKAQL 154
Score = 38.3 bits (85), Expect = 0.004
Identities = 17/27 (62%), Positives = 22/27 (81%)
Frame = +1
Query: 187 EEGALVVIAHDVDPIELVLFLPAYAVK 267
++ LVVIAHDVDPIE+V++LPA K
Sbjct: 150 KKAQLVVIAHDVDPIEIVVWLPALCRK 176
>SB_56418| Best HMM Match : Peptidase_A17 (HMM E-Value=1.3e-35)
Length = 1898
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/60 (25%), Positives = 33/60 (55%)
Frame = +3
Query: 258 CRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEEL 437
C++ + +++GK + AL+ +KT L + V R S + VV+ ++ +E+Y ++
Sbjct: 1208 CKRCRDEFTVIRGKEK--ALLGKKTAEQLKVLGVGPETRESVNAVVKGSDSDIHEQYSDI 1265
>SB_7961| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1957
Score = 29.9 bits (64), Expect = 1.6
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = +3
Query: 288 VKGKSRLGALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEEL 437
VKGK+ LG +KT L + V R S S VVEA ++ E+Y ++
Sbjct: 1092 VKGKALLG----KKTAEQLKVLRVGPETRESVSAVVEASDSDIREQYSDI 1137
>SB_6211| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 490
Score = 29.1 bits (62), Expect = 2.7
Identities = 16/53 (30%), Positives = 29/53 (54%)
Frame = +3
Query: 279 YCIVKGKSRLGALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEEL 437
+ +++GK + AL+ +KT L + V S S VVEA ++ E+Y ++
Sbjct: 338 FTVIRGKGK--ALLGKKTAEQLKVLRVGPETGESVSAVVEASDSDIREQYSDI 388
>SB_38146| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 136
Score = 28.7 bits (61), Expect = 3.6
Identities = 15/61 (24%), Positives = 31/61 (50%)
Frame = +1
Query: 157 HKHSHQAGREEEGALVVIAHDVDPIELVLFLPAYAVKWAYHTALSRASPASVHLYTARHA 336
H+ + + R+ E ++ V I L+ + + W+Y AL+ SPA+V++ ++
Sbjct: 50 HEATEELARQAEKMSLL---QVAKIALMFCILWFLATWSYQEALNDTSPAAVNILSSSSG 106
Query: 337 H 339
H
Sbjct: 107 H 107
>SB_54844| Best HMM Match : Microvir_J (HMM E-Value=1.7)
Length = 189
Score = 28.3 bits (60), Expect = 4.8
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = -3
Query: 463 RTPPPQCLRSSS*RSLKFVLMASTTFEKEARSPDST 356
R + +RS S RSL L ST+ EKEA+ D+T
Sbjct: 113 RVRKKEIIRSGSSRSLPECLRISTSKEKEAKDIDNT 148
>SB_21511| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.74)
Length = 437
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -3
Query: 388 FEKEARSPDSTFVRAKHVHVLRCTSAPRRDLPLT 287
F + +S R +H H+ RCTSAP P T
Sbjct: 61 FNNFTNTTESWPQRKRHFHLRRCTSAPEPSSPNT 94
>SB_48160| Best HMM Match : Cytochrom_C (HMM E-Value=1.8e-05)
Length = 212
Score = 28.3 bits (60), Expect = 4.8
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -3
Query: 136 PLWWRLIFLGNLSFSSFPQPLFPG 65
P WW ++F+G + FS L+PG
Sbjct: 56 PKWWFMLFIGTIVFSIGYLVLYPG 79
>SB_45519| Best HMM Match : RNB (HMM E-Value=1.6e-35)
Length = 2748
Score = 27.5 bits (58), Expect = 8.3
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +3
Query: 369 DRASFSKVVEAIKTNFNERYEELRKHWGG 455
DRAS+ + EA + + ER EEL K W G
Sbjct: 635 DRASYYNMAEAAEVS--ERVEELVKQWRG 661
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,197,244
Number of Sequences: 59808
Number of extensions: 265408
Number of successful extensions: 785
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -