Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30613
(576 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA) 124 4e-29
At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S ... 120 7e-28
At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45... 31 0.73
At1g17230.1 68414.m02099 leucine-rich repeat family protein / pr... 30 0.96
At3g55700.1 68416.m06188 UDP-glucoronosyl/UDP-glucosyl transfera... 29 2.9
At5g15920.1 68418.m01862 structural maintenance of chromosomes (... 28 3.9
At5g07010.1 68418.m00794 sulfotransferase family protein similar... 28 3.9
At4g19060.1 68417.m02808 disease resistance protein-related cont... 27 6.8
At3g09210.1 68416.m01095 KOW domain-containing transcription fac... 27 6.8
At5g01170.1 68418.m00021 glycine-rich protein predicted proteins... 27 9.0
>At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)
Length = 257
Score = 124 bits (299), Expect = 4e-29
Identities = 52/78 (66%), Positives = 67/78 (85%)
Frame = +3
Query: 252 SLCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYE 431
+LCRKM VPYCIVKGKSRLGA+VH+KT +CL LT V++ D+ FSK++EAIK NFN++YE
Sbjct: 163 ALCRKMEVPYCIVKGKSRLGAVVHQKTASCLCLTTVKNEDKLEFSKILEAIKANFNDKYE 222
Query: 432 ELRKHWGGGVLGNKSNAR 485
E RK WGGG++G+KS A+
Sbjct: 223 EYRKKWGGGIMGSKSQAK 240
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/28 (64%), Positives = 22/28 (78%)
Frame = +1
Query: 184 EEEGALVVIAHDVDPIELVLFLPAYAVK 267
+ + LVVIAHDVDPIELV++LPA K
Sbjct: 140 QNKAQLVVIAHDVDPIELVVWLPALCRK 167
Score = 34.7 bits (76), Expect = 0.045
Identities = 22/67 (32%), Positives = 28/67 (41%)
Frame = +2
Query: 2 DKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLV 181
DK A LFK+L KYRPE +P ++ G N VT L+
Sbjct: 80 DKNLATSLFKVLLKYRPE-DKAAKKERLVKKAQAEAEGKPSESKKPIVVKYGLNHVTYLI 138
Query: 182 EKKKAHL 202
E+ KA L
Sbjct: 139 EQNKAQL 145
>At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S
RIBOSOMAL PROTEIN L7A - Oryza sativa,
SWISSPROT:RL7A_ORYSA
Length = 256
Score = 120 bits (289), Expect = 7e-28
Identities = 51/78 (65%), Positives = 65/78 (83%)
Frame = +3
Query: 252 SLCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYE 431
+LCRKM VPYCIVKGKSRLGA+VH+KT L LT V++ D+ FSK++EAIK NFN++YE
Sbjct: 162 ALCRKMEVPYCIVKGKSRLGAVVHQKTAAALCLTTVKNEDKLEFSKILEAIKANFNDKYE 221
Query: 432 ELRKHWGGGVLGNKSNAR 485
E RK WGGG++G+KS A+
Sbjct: 222 EYRKKWGGGIMGSKSQAK 239
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/28 (64%), Positives = 22/28 (78%)
Frame = +1
Query: 184 EEEGALVVIAHDVDPIELVLFLPAYAVK 267
+ + LVVIAHDVDPIELV++LPA K
Sbjct: 139 QNKAQLVVIAHDVDPIELVVWLPALCRK 166
Score = 35.1 bits (77), Expect = 0.034
Identities = 23/67 (34%), Positives = 28/67 (41%)
Frame = +2
Query: 2 DKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLV 181
DK A LFKIL KYRPE +P ++ G N VT L+
Sbjct: 79 DKNLATSLFKILLKYRPE-DKAAKKERLLNKAQAEAEGKPAESKKPIVVKYGLNHVTYLI 137
Query: 182 EKKKAHL 202
E+ KA L
Sbjct: 138 EQNKAQL 144
>At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 156
Score = 30.7 bits (66), Expect = 0.73
Identities = 15/63 (23%), Positives = 30/63 (47%)
Frame = +3
Query: 255 LCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEE 434
LC + GVPY V K L K TC L ++ ++ + +KT++ + ++
Sbjct: 88 LCEEAGVPYVYVPSKEDLAQAGATKRPTCCVLVMLKPAKGDLTAEELAKLKTDYEQVSDD 147
Query: 435 LRK 443
+++
Sbjct: 148 IKE 150
>At1g17230.1 68414.m02099 leucine-rich repeat family protein /
protein kinase family protein contains protein kinase
domain, Pfam:PF00069; contains leucine-rich repeats,
Pfam:PF00560
Length = 1133
Score = 30.3 bits (65), Expect = 0.96
Identities = 20/75 (26%), Positives = 32/75 (42%)
Frame = +3
Query: 234 AGPFPASLCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRASFSKVVEAIKTN 413
+GP PA CR + + G ++L + R TC +LT + GD + +
Sbjct: 416 SGPIPAHFCRFQTL-ILLSLGSNKLSGNIPRDLKTCKSLTKLMLGDNQLTGSLPIELFNL 474
Query: 414 FNERYEELRKHWGGG 458
N EL ++W G
Sbjct: 475 QNLTALELHQNWLSG 489
>At3g55700.1 68416.m06188 UDP-glucoronosyl/UDP-glucosyl transferase
family protein glucuronosyl transferase homolog,
Lycopersicon esculentum, PIR:S39507 ;contains Pfam
profile: PF00201 UDP-glucoronosyl and UDP-glucosyl
transferase
Length = 460
Score = 28.7 bits (61), Expect = 2.9
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = +2
Query: 287 CQGQVPPRCTCTPQDMHMLSSNKCGVW*PRLLLEGRGSHQDELQRALRGAPQALG 451
C+G VP CT D H+ + VW +LLE + E+++ LR G
Sbjct: 362 CEG-VPMICTSCFTDQHVNARYIVDVWRVGMLLERSKMEKKEIEKVLRSVMMEKG 415
>At5g15920.1 68418.m01862 structural maintenance of chromosomes (SMC)
family protein (MSS2) similar to SMC-related protein MSS2
[Arabidopsis thaliana] GI:9965743; contains Pfam profiles
PF02483: SMC family C-terminal domain, PF02463:
RecF/RecN/SMC N terminal domain
Length = 1053
Score = 28.3 bits (60), Expect = 3.9
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = -3
Query: 151 SDGIGPLWWRLIFLGNLSFSSFPQPLFPGCFSLRPVFLQNLEKALSCSLV 2
+ G+ P+ R +F + +S QP P CF L P L LE + +CS++
Sbjct: 971 NQGMDPINERKMFQQLVRAAS--QPNTPQCFLLTPKLLPELEYSEACSIL 1018
>At5g07010.1 68418.m00794 sulfotransferase family protein similar to
steroid sulfotransferase 3 [Brassica napus] GI:3420008,
steroid sulfotransferase 1 [Brassica napus] GI:3420004;
contains Pfam profile PF00685: Sulfotransferase domain
Length = 359
Score = 28.3 bits (60), Expect = 3.9
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -3
Query: 190 LLLDQLGDCVCAGSDGIGPLWWRLI 116
+LLDQ D C G G GP W ++
Sbjct: 214 VLLDQAFDLYCRGVIGFGPFWEHML 238
>At4g19060.1 68417.m02808 disease resistance protein-related
contains Pfam domain, PF00931: NB-ARC domain, a novel
signalling motif found in plant resistance gene products
Length = 383
Score = 27.5 bits (58), Expect = 6.8
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +3
Query: 372 RASFSKVVEAIKTNFNERYEE 434
++ F K +E IK++FNE YE+
Sbjct: 18 KSEFDKELEKIKSSFNEEYEK 38
>At3g09210.1 68416.m01095 KOW domain-containing transcription factor
family protein ; est match
Length = 333
Score = 27.5 bits (58), Expect = 6.8
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -3
Query: 112 LGNLSFSSFPQPLFPGCFSLRPVFLQNLEKAL 17
L N S S P+P+FPGC +R + + + ++
Sbjct: 141 LKNGSISVKPKPVFPGCIFIRCILNKEIHDSI 172
>At5g01170.1 68418.m00021 glycine-rich protein predicted proteins,
Arabidopsis thaliana
Length = 568
Score = 27.1 bits (57), Expect = 9.0
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +3
Query: 360 ESGDRASFSKVVEAIKTNFNERYEELRKHWGGGVLGNKSNARIA 491
E DR S S ++ + +E + E+R GGG +SN+ ++
Sbjct: 448 EEEDRYSRSNSAGMVERSLSESWPEMRNGEGGGPKMRRSNSNVS 491
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,916,677
Number of Sequences: 28952
Number of extensions: 186087
Number of successful extensions: 566
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1121903184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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