Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30612
         (725 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   4.4  
X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.          21   7.7  
AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.           21   7.7  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = +3

Query: 120 AAVVSATNVRQCPGKSVPELSKAVQLHECIKLPCV 224
           A  V    VR+   + +P+L   + +  C+K  CV
Sbjct: 34  AECVFGKQVRELGSQWIPDLGVPIGVLYCMKCECV 68


>X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.
          Length = 251

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +2

Query: 128 RLSHKRETMSRKISPR 175
           R+ HK+E M++  +PR
Sbjct: 140 RMKHKKEQMNKVSTPR 155


>AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.
          Length = 246

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +2

Query: 128 RLSHKRETMSRKISPR 175
           R+ HK+E M++  +PR
Sbjct: 131 RMKHKKEQMNKVSTPR 146


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,259
Number of Sequences: 336
Number of extensions: 3273
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19363530
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)