Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30612
         (725 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33032| Best HMM Match : Prothymosin (HMM E-Value=0.78)              29   3.8  
SB_52903| Best HMM Match : DUF1126 (HMM E-Value=0)                     29   5.1  
SB_7931| Best HMM Match : 7tm_1 (HMM E-Value=8.2e-26)                  28   6.7  
SB_52582| Best HMM Match : 7tm_1 (HMM E-Value=5.4e-39)                 28   6.7  

>SB_33032| Best HMM Match : Prothymosin (HMM E-Value=0.78)
          Length = 508

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -3

Query: 297 LFFKSKTSFSGVNLIQYVDLYFSLERKVV*CIHVTGPPYSTR 172
           LF+ S+ +    NL Q+  L+  L  ++  C  VT P Y  R
Sbjct: 301 LFYYSRHNLKVWNLNQFHSLFTMLSSRIKRCFRVTSPGYPAR 342


>SB_52903| Best HMM Match : DUF1126 (HMM E-Value=0)
          Length = 1452

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 17/69 (24%), Positives = 34/69 (49%)
 Frame = +2

Query: 278 VLDLKNSVSAKLFEIDLPFIGVDGTSVCDKIHTEDDQKSGCPLKAGTNYIYKDTFPILSI 457
           V D ++S+  ++    L +  VD T    ++HT +D +   P+      + KD   + S 
Sbjct: 321 VWDDRDSMFGEMRPCILHYYLVDDTVEIREVHTPNDGRDPFPVLVCRQKLAKDRTDVESS 380

Query: 458 YPSIQAEVT 484
           +PS+  E++
Sbjct: 381 FPSVVLELS 389


>SB_7931| Best HMM Match : 7tm_1 (HMM E-Value=8.2e-26)
          Length = 260

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 417 PTTSIKTPFLFSVFTHQFKR 476
           P  S   PFL+++FT QFK+
Sbjct: 222 PLNSCANPFLYAIFTSQFKK 241


>SB_52582| Best HMM Match : 7tm_1 (HMM E-Value=5.4e-39)
          Length = 587

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 417 PTTSIKTPFLFSVFTHQFKR 476
           P  S   PFL+++FT QFK+
Sbjct: 458 PLNSCANPFLYAIFTSQFKK 477


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,321,526
Number of Sequences: 59808
Number of extensions: 384027
Number of successful extensions: 674
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)