Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30612
         (725 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40422-5|AAA81448.2|  494|Caenorhabditis elegans Hypothetical pr...    30   1.9  
U64858-7|AAB18285.2|  340|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z70780-15|CAA94822.2|  702|Caenorhabditis elegans Hypothetical p...    28   7.8  
AF000262-9|AAN60529.1|  820|Caenorhabditis elegans Hypothetical ...    28   7.8  
AC006608-5|ABC71834.1|  311|Caenorhabditis elegans Hypothetical ...    28   7.8  
AC006608-4|AAF39758.2|  381|Caenorhabditis elegans Hypothetical ...    28   7.8  

>U40422-5|AAA81448.2|  494|Caenorhabditis elegans Hypothetical
           protein T24D8.1 protein.
          Length = 494

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = -3

Query: 345 STPIKGRSISNNFALTLFFKSKTSFSGVNLIQYVDLYFSLE 223
           +TP +   +  N  L++F +  +SFS   +  ++D+YF  E
Sbjct: 48  ATPTQYDGVPTNVTLSMFIEGMSSFSAQTMDYHLDVYFQEE 88


>U64858-7|AAB18285.2|  340|Caenorhabditis elegans Hypothetical
           protein C16D9.6 protein.
          Length = 340

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +2

Query: 419 NYIYKDTFPILSIYPSIQAEVTWALKAEDKM*FVLE 526
           N  +K  +    IY +I +E  W LKA+D    ++E
Sbjct: 155 NLFFKSRYAFHHIYTNISSEFDWYLKADDDTFVIVE 190


>Z70780-15|CAA94822.2|  702|Caenorhabditis elegans Hypothetical
           protein F46B6.6a protein.
          Length = 702

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +2

Query: 269 EKDVLDLKNSVSAKLFEIDLPFIGVDGTS-VCDKIHTEDDQKSGCPLKAGTNY 424
           + DV+DLK +   K+  + +    V G   VC  + +    K GC L AG+++
Sbjct: 317 QADVMDLKATKKGKVEAVIIESSVVHGIGKVCTLVVSRGTLKKGCVLVAGSSW 369


>AF000262-9|AAN60529.1|  820|Caenorhabditis elegans Hypothetical
           protein C48E7.8 protein.
          Length = 820

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +2

Query: 350 TSVCDKIHTEDDQKSGCPLKAGTNYIYKDTFPILSIYPSIQAEVTWALK 496
           T VC   +  ++Q S   L     Y++ +T  + S+Y S   + TW++K
Sbjct: 149 TGVCLPSNCHENQMSKL-LNLAKEYLFNETIHVDSVYCSHGTDSTWSVK 196


>AC006608-5|ABC71834.1|  311|Caenorhabditis elegans Hypothetical
           protein C15F1.5b protein.
          Length = 311

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 265 TRKRCLGFKKQCECEII*NRPTFYWCRRNVCLR 363
           TR+ C+G    CE E++ N P+   C  +VC++
Sbjct: 106 TRQPCMG-SLHCEGEVLRNFPSELECDHDVCIK 137


>AC006608-4|AAF39758.2|  381|Caenorhabditis elegans Hypothetical
           protein C15F1.5a protein.
          Length = 381

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 265 TRKRCLGFKKQCECEII*NRPTFYWCRRNVCLR 363
           TR+ C+G    CE E++ N P+   C  +VC++
Sbjct: 176 TRQPCMG-SLHCEGEVLRNFPSELECDHDVCIK 207


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,673,221
Number of Sequences: 27780
Number of extensions: 295742
Number of successful extensions: 650
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)