Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30612
         (725 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g22550.2 68418.m02633 expressed protein contains Pfam profile...    28   5.5  
At3g23480.1 68416.m02958 cyclopropane fatty acid synthase-relate...    27   9.6  
At3g23470.1 68416.m02957 cyclopropane-fatty-acyl-phospholipid sy...    27   9.6  

>At5g22550.2 68418.m02633 expressed protein contains Pfam profile
           PF03140: Plant protein of unknown function
          Length = 492

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = -3

Query: 291 FKSKTSFSGVNLIQYVDLYFSLERKV 214
           F SKT  +GV LI  VDL   LE+K+
Sbjct: 94  FVSKTKENGVYLIHLVDLVSGLEQKI 119


>At3g23480.1 68416.m02958 cyclopropane fatty acid synthase-related
           similar to cyclopropane synthase [Sterculia foetida]
           GI:21069167
          Length = 513

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -2

Query: 163 FPGHCLTFVAETTAARAKQTKALVSNI 83
           FPG CL  +A  T+A A  ++  + N+
Sbjct: 347 FPGGCLPSLARVTSAMASSSRLCIENV 373


>At3g23470.1 68416.m02957 cyclopropane-fatty-acyl-phospholipid
           synthase family protein similar to cyclopropane synthase
           [Sterculia foetida] GI:21069167; contains Pfam profile
           PF02353: Cyclopropane-fatty-acyl-phospholipid synthase
          Length = 406

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -2

Query: 163 FPGHCLTFVAETTAARAKQTKALVSNI 83
           FPG CL  +A  T+A A  ++  + N+
Sbjct: 294 FPGGCLPSLARVTSAMASSSRLCIENV 320


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,444,314
Number of Sequences: 28952
Number of extensions: 262812
Number of successful extensions: 537
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)