Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30611
(501 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1245 + 25154586-25155040,25155519-25155604,25155690-25155733 37 0.008
10_07_0172 + 13804803-13805293,13805423-13805537,13805766-138058... 36 0.024
07_01_0064 + 463358-464341 31 0.52
04_01_0537 + 6970887-6971319,6971428-6971540,6971552-6972016 31 0.52
05_05_0319 - 24080914-24080929,24082320-24082621,24082666-240827... 30 0.91
08_02_0110 + 12650328-12650552,12650827-12651423,12651480-126518... 30 1.2
04_01_0548 + 7103540-7103972,7104081-7104667 30 1.2
01_06_1677 + 39092268-39092306,39092395-39092447,39094259-390943... 30 1.2
06_03_0575 + 22431744-22432212,22432473-22433077 29 1.6
12_01_0990 + 10052430-10052895,10053633-10054219 29 2.8
08_01_0114 - 900530-901191,901269-901338,901536-901640,901721-90... 29 2.8
07_01_0058 + 438157-438660 29 2.8
05_05_0362 + 24415257-24415481,24415585-24415835,24416659-244167... 29 2.8
04_01_0562 + 7212504-7212849,7212946-7213544 28 3.7
01_05_0693 - 24339917-24340524,24340778-24341252 28 3.7
01_01_0058 + 440328-440437,440514-440733,441605-441805,441915-44... 28 4.8
08_01_1006 - 10191817-10191822,10192449-10192745,10192826-101929... 27 8.5
08_01_0749 + 7063297-7064370 27 8.5
01_06_1797 + 39941482-39941608,39942302-39942497,39942601-399428... 27 8.5
01_05_0286 - 20403748-20403828,20404493-20404693,20404774-204049... 27 8.5
>07_03_1245 + 25154586-25155040,25155519-25155604,25155690-25155733
Length = 194
Score = 37.1 bits (82), Expect = 0.008
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Frame = +1
Query: 88 VVMASSADTDPPRHYDLNQA--KELFESFVKEHNREYKDDADRELHYQSFKKNLAEIN 255
+V A +ADTD + +++ K FE ++KEH R Y ++ Y++FKK + IN
Sbjct: 43 IVDADAADTDEDGNNAVDEPAMKAKFEDWMKEHGRIYITKKEKAHRYENFKKAMKGIN 100
>10_07_0172 +
13804803-13805293,13805423-13805537,13805766-13805831,
13805921-13806009,13806103-13806193,13806312-13806458,
13806575-13806667,13806745-13806846,13806957-13807541,
13808523-13808813,13808866-13808937
Length = 713
Score = 35.5 bits (78), Expect = 0.024
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Frame = +3
Query: 249 DKQLNEKNPYTTFGINKFA---DYTPEEQQSRLGLRLPAKKT*VLRLQSIGMLFQTK*MY 419
DK+ P T G ++FA D TPE+ G+ P + +RLQ + F+T+
Sbjct: 94 DKESCSSKPNATAGASRFALAGDQTPEDSPVIAGVASPKHQAAAVRLQKVYKSFRTRRQL 153
Query: 420 CDC 428
DC
Sbjct: 154 ADC 156
>07_01_0064 + 463358-464341
Length = 327
Score = 31.1 bits (67), Expect = 0.52
Identities = 19/55 (34%), Positives = 28/55 (50%)
Frame = +1
Query: 79 IATVVMASSADTDPPRHYDLNQAKELFESFVKEHNREYKDDADRELHYQSFKKNL 243
+A V MAS A T RH + ++ EH R YKD A++ ++ FK N+
Sbjct: 1 MAKVTMASRAGTMEARH----------DKWMAEHGRTYKDAAEKARRFRVFKANV 45
>04_01_0537 + 6970887-6971319,6971428-6971540,6971552-6972016
Length = 336
Score = 31.1 bits (67), Expect = 0.52
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = +1
Query: 160 ESFVKEHNREYKDDADRELHYQSFKKNLAEINN 258
E ++ ++ R YKDDA++ ++ FK N+A I +
Sbjct: 38 ERWMAQYGRMYKDDAEKARRFEVFKANVAFIES 70
>05_05_0319 -
24080914-24080929,24082320-24082621,24082666-24082787,
24083189-24083534
Length = 261
Score = 30.3 bits (65), Expect = 0.91
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 148 KELFESFVKEHNREYKDDADRELHYQSFKK 237
K F+ ++KEHNR Y + ++ Y+ FK+
Sbjct: 183 KARFQDWMKEHNRSYSTEEEKARCYEIFKE 212
>08_02_0110 +
12650328-12650552,12650827-12651423,12651480-12651857,
12651997-12652218,12652407-12652483,12652553-12652631,
12652920-12653105
Length = 587
Score = 29.9 bits (64), Expect = 1.2
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Frame = +1
Query: 31 LLIHCAKMNFVSVALLIATVVMASSADTDPPRH-YDLNQAK--ELFESFVKEHNREY 192
L+IHC +MN+V + V + P H Y L++ K E ++ E + Y
Sbjct: 410 LIIHCGRMNYVEAEAMKKPVAYLNPCRISKPNHTYTLDEKKLPEHIKAMTPEERKAY 466
>04_01_0548 + 7103540-7103972,7104081-7104667
Length = 339
Score = 29.9 bits (64), Expect = 1.2
Identities = 11/33 (33%), Positives = 22/33 (66%)
Frame = +1
Query: 160 ESFVKEHNREYKDDADRELHYQSFKKNLAEINN 258
E ++ ++ R Y+DDA++ ++ FK N+A I +
Sbjct: 38 ERWMAQYGRVYRDDAEKARRFEVFKANVAFIES 70
>01_06_1677 +
39092268-39092306,39092395-39092447,39094259-39094350,
39094435-39094646,39095196-39095207
Length = 135
Score = 29.9 bits (64), Expect = 1.2
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +1
Query: 133 DLNQA-KELFESFVKEHNREYKDDADRELHYQSFKKNL 243
D QA K F+ ++ + NR YKD+A++ ++ FK +
Sbjct: 85 DEEQALKVRFQEWMNKFNRNYKDEAEKAYRFEVFKSTV 122
>06_03_0575 + 22431744-22432212,22432473-22433077
Length = 357
Score = 29.5 bits (63), Expect = 1.6
Identities = 11/42 (26%), Positives = 23/42 (54%)
Frame = +1
Query: 133 DLNQAKELFESFVKEHNREYKDDADRELHYQSFKKNLAEINN 258
D + +E +E + +H R YKD ++ ++ F+ N I++
Sbjct: 41 DDSAMRERYEKWAADHGRTYKDSLEKARRFEVFRTNALFIDS 82
>12_01_0990 + 10052430-10052895,10053633-10054219
Length = 350
Score = 28.7 bits (61), Expect = 2.8
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 160 ESFVKEHNREYKDDADRELHYQSFKKNLAEINN 258
E ++ +H R YKD A++ + FK N+A I +
Sbjct: 45 ERWMAQHGRVYKDAAEKARRLEVFKANVAFIES 77
>08_01_0114 -
900530-901191,901269-901338,901536-901640,901721-901831,
901912-902016,902245-902391,903273-903354,903445-903786,
903873-904177,904259-904435,904799-904852,905171-905254,
905855-905968,906048-906321,907552-907926,908003-908267,
908352-908538,908615-909052,909895-909966,910037-910630,
911471-911623,911700-911828,912326-912657,912705-912840,
913046-913491,913580-915087,915169-915431,915622-915738,
915844-916014,916743-916845,916930-916988,918360-918461,
918560-918649,918727-918877,919745-919830,919926-920102,
920915-920978,921859-922008,923132-923211,923311-923376,
924540-924747,925502-925575,925761-925848,926140-926312,
926541-926609,926698-926741,927074-927167,927290-927366,
927475-927552,927992-928085
Length = 3314
Score = 28.7 bits (61), Expect = 2.8
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = +1
Query: 10 GTSKPV-PLLIHCAKMNFVSVALLIATVVMASSADTDPPRHYDLNQAKELFESFVKEHNR 186
G PV + + C K N S L VV SA +P Y+L +LF SF +H+R
Sbjct: 597 GLGTPVISVQVDCPKSNH-SPEALTRVVVQEFSAIYEPVFIYNLMHIYDLFSSFQFQHDR 655
>07_01_0058 + 438157-438660
Length = 167
Score = 28.7 bits (61), Expect = 2.8
Identities = 9/28 (32%), Positives = 19/28 (67%)
Frame = +1
Query: 160 ESFVKEHNREYKDDADRELHYQSFKKNL 243
+ ++ + NREYKD+A++ ++ FK +
Sbjct: 86 QEWMNKFNREYKDEAEKAYRFEIFKSTV 113
>05_05_0362 +
24415257-24415481,24415585-24415835,24416659-24416755,
24417272-24417820,24418029-24418482,24418747-24418860,
24418940-24419023,24419499-24420067
Length = 780
Score = 28.7 bits (61), Expect = 2.8
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +1
Query: 352 LLRRHKFSDFSLSECYSKRNKCIVTACKMFKIYRI 456
L R + +DFS+ C S N VT K K Y +
Sbjct: 716 LAREKEINDFSIKRCISVLNSMDVTKAKKVKAYTV 750
>04_01_0562 + 7212504-7212849,7212946-7213544
Length = 314
Score = 28.3 bits (60), Expect = 3.7
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +1
Query: 160 ESFVKEHNREYKDDADRELHYQSFKKNLAEINN 258
E ++ +H R Y DDA++ + F+ N+A I +
Sbjct: 6 ERWMAKHGRAYADDAEKARRLEVFRDNVAFIES 38
>01_05_0693 - 24339917-24340524,24340778-24341252
Length = 360
Score = 28.3 bits (60), Expect = 3.7
Identities = 17/63 (26%), Positives = 29/63 (46%)
Frame = +1
Query: 67 VALLIATVVMASSADTDPPRHYDLNQAKELFESFVKEHNREYKDDADRELHYQSFKKNLA 246
+ALL+ V A++A D PR A+ E ++ R Y D A++ + F N
Sbjct: 15 LALLVVAVAAAAAARGDQPRRGHSMAARH--ERWMARFGRAYADAAEKARRMEVFAANAE 72
Query: 247 EIN 255
++
Sbjct: 73 RVD 75
>01_01_0058 +
440328-440437,440514-440733,441605-441805,441915-441985,
442058-442217,444166-444492,444529-444759,444869-445249,
445573-445648,445736-445799,446334-446469,447666-447710,
447851-447916
Length = 695
Score = 27.9 bits (59), Expect = 4.8
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -3
Query: 289 PNVVYGFFSFNCLSLPSFS*MIDNAALCRHHPCIPC 182
P ++YG+ FN PSFS + LC++ + C
Sbjct: 468 PTLLYGYGGFNISLTPSFS--VSRVVLCKNMGFVVC 501
>08_01_1006 -
10191817-10191822,10192449-10192745,10192826-10192975,
10194558-10195370
Length = 421
Score = 27.1 bits (57), Expect = 8.5
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +1
Query: 352 LLRRHKFSDFSLSECYSKRNKCIVTACKMFKIYR 453
L + F+++ YSK NK V AC++ + +R
Sbjct: 376 LSKTESLQSFAVTFLYSKSNKEYVKACRVLRAFR 409
>08_01_0749 + 7063297-7064370
Length = 357
Score = 27.1 bits (57), Expect = 8.5
Identities = 17/57 (29%), Positives = 28/57 (49%)
Frame = +2
Query: 107 RIQILRDIMTSIKPKNCSRVSSKNITGNTRMMPTESCIINHSRKTWQR*TIEREESI 277
RI++ D+ + KP +VS +N TR T C + S + + T ERE+ +
Sbjct: 285 RIELQEDLTYAEKPVRILKVSERN----TRNRVTRFCKVQWSNHSEEEATWEREDEL 337
>01_06_1797 +
39941482-39941608,39942302-39942497,39942601-39942828,
39943157-39943388,39943476-39943583,39943696-39943968,
39944261-39944545
Length = 482
Score = 27.1 bits (57), Expect = 8.5
Identities = 11/40 (27%), Positives = 18/40 (45%)
Frame = -2
Query: 128 CLGGSVSADDAITTVAINNATLTKFIFAQCINSGTGLLVP 9
C GG+ A A+ K ++ C+ +GTG+ P
Sbjct: 10 CCGGATGPGYATPLEAMEKGPREKLLYVTCVYNGTGINKP 49
>01_05_0286 -
20403748-20403828,20404493-20404693,20404774-20404955,
20405022-20405187,20405318-20405506,20409155-20409238,
20409482-20409550,20409638-20409700,20410327-20410425,
20410882-20410983,20411237-20411341,20412259-20412372
Length = 484
Score = 27.1 bits (57), Expect = 8.5
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +2
Query: 101 HRRIQILRDIMTSIKPKNCSRVSSKNITGNTRMMPTESCIINHS 232
H +IQ L +I+ + K + +SKN N PT++ +I S
Sbjct: 246 HNQIQSLTNIIAAFKEEKTISTTSKNSKPNKPNPPTQTPVIAKS 289
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,244,178
Number of Sequences: 37544
Number of extensions: 199651
Number of successful extensions: 528
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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