Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30611
(501 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g35350.2 68417.m05022 cysteine endopeptidase, papain-type (XC... 35 0.035
At4g35350.1 68417.m05023 cysteine endopeptidase, papain-type (XC... 35 0.035
At1g29110.1 68414.m03563 cysteine proteinase, putative contains ... 35 0.035
At4g11310.1 68417.m01827 cysteine proteinase, putative contains ... 32 0.19
At2g34080.1 68415.m04172 cysteine proteinase, putative contains ... 31 0.58
At2g27420.1 68415.m03314 cysteine proteinase, putative contains ... 30 0.76
At5g60360.1 68418.m07568 cysteine proteinase, putative / AALP pr... 30 1.0
At1g47128.1 68414.m05222 cysteine proteinase (RD21A) / thiol pro... 29 2.3
At2g42920.1 68415.m05318 pentatricopeptide (PPR) repeat-containi... 28 3.1
At1g29090.1 68414.m03561 peptidase C1A papain family protein con... 28 4.1
At5g38790.1 68418.m04690 expressed protein predicted protein, Ar... 27 7.1
At5g37780.1 68418.m04549 calmodulin-1/4 (CAM1) identical to calm... 27 7.1
At1g66410.1 68414.m07542 calmodulin-1/4 (CAM4) identical to calm... 27 7.1
At4g31420.2 68417.m04461 zinc finger (C2H2 type) family protein ... 27 9.4
At4g31420.1 68417.m04460 zinc finger (C2H2 type) family protein ... 27 9.4
At4g10790.1 68417.m01759 UBX domain-containing protein low simil... 27 9.4
>At4g35350.2 68417.m05022 cysteine endopeptidase, papain-type (XCP1)
identical to papain-type cysteine endopeptidase XCP1
GI:6708181 from [Arabidopsis thaliana]
Length = 288
Score = 34.7 bits (76), Expect = 0.035
Identities = 15/46 (32%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Frame = +1
Query: 121 PRHY-DLNQAKELFESFVKEHNREYKDDADRELHYQSFKKNLAEIN 255
P H + ++ ELFES++ EH++ YK ++ ++ F++NL I+
Sbjct: 38 PEHLTNTDKLLELFESWMSEHSKAYKSVEEKVHRFEVFRENLMHID 83
Score = 30.3 bits (65), Expect = 0.76
Identities = 18/36 (50%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +3
Query: 249 DKQLNEKNPYTTFGINKFADYTPEEQQSR-LGLRLP 353
D++ NE N Y G+N+FAD T EE + R LGL P
Sbjct: 83 DQRNNEINSYW-LGLNEFADLTHEEFKGRYLGLAKP 117
>At4g35350.1 68417.m05023 cysteine endopeptidase, papain-type (XCP1)
identical to papain-type cysteine endopeptidase XCP1
GI:6708181 from [Arabidopsis thaliana]
Length = 355
Score = 34.7 bits (76), Expect = 0.035
Identities = 15/46 (32%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Frame = +1
Query: 121 PRHY-DLNQAKELFESFVKEHNREYKDDADRELHYQSFKKNLAEIN 255
P H + ++ ELFES++ EH++ YK ++ ++ F++NL I+
Sbjct: 38 PEHLTNTDKLLELFESWMSEHSKAYKSVEEKVHRFEVFRENLMHID 83
Score = 30.3 bits (65), Expect = 0.76
Identities = 18/36 (50%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +3
Query: 249 DKQLNEKNPYTTFGINKFADYTPEEQQSR-LGLRLP 353
D++ NE N Y G+N+FAD T EE + R LGL P
Sbjct: 83 DQRNNEINSYW-LGLNEFADLTHEEFKGRYLGLAKP 117
>At1g29110.1 68414.m03563 cysteine proteinase, putative contains
similarity to cysteine protease SPCP1 GI:13491750 from
[Ipomoea batatas]
Length = 334
Score = 34.7 bits (76), Expect = 0.035
Identities = 20/70 (28%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Frame = +1
Query: 61 VSV-ALLIATVVMASSADTDPPR-HYDLNQAK--ELFESFVKEHNREYKDDADRELHYQS 228
VSV ++ +A +++ R H LN+ + + ++ + +R YKD++++E+ +
Sbjct: 2 VSVRSVFVALTILSMDLRISQARPHVTLNEQSIVDYHQQWMTQFSRVYKDESEKEMRLKV 61
Query: 229 FKKNLAEINN 258
FKKNL I N
Sbjct: 62 FKKNLKFIEN 71
>At4g11310.1 68417.m01827 cysteine proteinase, putative contains
similarity to cysteine proteinase RD21A (thiol protease)
GI:435619, SP:P43297 from [Arabidopsis thaliana]
Length = 364
Score = 32.3 bits (70), Expect = 0.19
Identities = 24/84 (28%), Positives = 42/84 (50%)
Frame = +1
Query: 7 LGTSKPVPLLIHCAKMNFVSVALLIATVVMASSADTDPPRHYDLNQAKELFESFVKEHNR 186
+G++K L++ A M S A I V++ + +D +A +FES++ +H +
Sbjct: 1 MGSAKSAMLILLVA-MVIASCATAIDMSVVSYDDNNRLHSVFDA-EASLIFESWMVKHGK 58
Query: 187 EYKDDADRELHYQSFKKNLAEINN 258
Y A++E F+ NL INN
Sbjct: 59 VYGSVAEKERRLTIFEDNLRFINN 82
>At2g34080.1 68415.m04172 cysteine proteinase, putative contains
similarity to cysteine protease SPCP1 GI:13491750 from
[Ipomoea batatas]
Length = 345
Score = 30.7 bits (66), Expect = 0.58
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 160 ESFVKEHNREYKDDADRELHYQSFKKNLAEINN 258
E ++ +REY+D+ ++ + FKKNL I N
Sbjct: 40 EQWMARFSREYRDELEKNMRRDVFKKNLKFIEN 72
>At2g27420.1 68415.m03314 cysteine proteinase, putative contains
similarity to cysteine protease SPCP1 GI:13491750 from
[Ipomoea batatas]
Length = 348
Score = 30.3 bits (65), Expect = 0.76
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +1
Query: 145 AKELFESFVKEHNREYKDDADRELHYQSFKKNLAEINN 258
A E E ++ NR Y D+ ++ + FKKNL + N
Sbjct: 31 AIEKHEQWMARFNRVYSDETEKRNRFNIFKKNLEFVQN 68
>At5g60360.1 68418.m07568 cysteine proteinase, putative / AALP
protein (AALP) identical to AALP protein GI:7230640 from
[Arabidopsis thaliana]; similar to barley aleurain
Length = 358
Score = 29.9 bits (64), Expect = 1.0
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +3
Query: 222 SIIQEKLGRDKQLNEKNPYTTFGINKFADYTPEE-QQSRLG 341
SI +E L + N+K G+N+FAD T +E Q+++LG
Sbjct: 81 SIFKENLDLIRSTNKKGLSYKLGVNQFADLTWQEFQRTKLG 121
>At1g47128.1 68414.m05222 cysteine proteinase (RD21A) / thiol
protease identical to SP|P43297 Cysteine proteinase
RD21A precursor (EC 3.4.22.-) {Arabidopsis thaliana},
thiol protease RD21A SP:P43297 from [Arabidopsis
thaliana]
Length = 462
Score = 28.7 bits (61), Expect = 2.3
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +3
Query: 225 IIQEKLGRDKQLNEKNPYTTFGINKFADYTPEEQQSR-LGLRLPAK 359
I ++ L + NEKN G+ +FAD T +E +S+ LG ++ K
Sbjct: 75 IFKDNLRFVDEHNEKNLSYRLGLTRFADLTNDEYRSKYLGAKMEKK 120
>At2g42920.1 68415.m05318 pentatricopeptide (PPR) repeat-containing
protein and genefinder
Length = 559
Score = 28.3 bits (60), Expect = 3.1
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = -3
Query: 409 FVWNSIPID*SRRTYVFLAGSLNPNLLCCSSGV*SANLLMPNV 281
FVWN+I SR ++ +A S+ ++LC S V L P+V
Sbjct: 90 FVWNTIIRGFSRSSFPEMAISIFIDMLCSSPSVKPQRLTYPSV 132
>At1g29090.1 68414.m03561 peptidase C1A papain family protein
contains similarity to cysteine protease SPCP1
GI:13491750 from [Ipomoea batatas]; contains Pfam
profile PF00112: Papain family cysteine protease
Length = 355
Score = 27.9 bits (59), Expect = 4.1
Identities = 16/62 (25%), Positives = 33/62 (53%)
Frame = +1
Query: 58 FVSVALLIATVVMASSADTDPPRHYDLNQAKELFESFVKEHNREYKDDADRELHYQSFKK 237
F+ V+L I ++ + S T ++ A E + ++ +R Y D+ ++++ + FKK
Sbjct: 15 FMLVSLTILSMNLKVSQATSRVTFHEPIVA-EHHQQWMTRFSRVYSDELEKQMRFDVFKK 73
Query: 238 NL 243
NL
Sbjct: 74 NL 75
>At5g38790.1 68418.m04690 expressed protein predicted protein,
Arabidopsis thaliana; expression supported by MPSS
Length = 131
Score = 27.1 bits (57), Expect = 7.1
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +1
Query: 94 MASSADTDP--PRHYDLNQAKELFESFVKEHNREYKDDADRELHYQSFKK 237
MAS A + P R + N+A +L ++ E N + K+D D HY KK
Sbjct: 61 MASDASSGPNYQRFHQKNKALDL-KNGKNEGNSKSKNDDDHHNHYHDGKK 109
>At5g37780.1 68418.m04549 calmodulin-1/4 (CAM1) identical to
calmodulin 4 [Arabidopsis thaliana] GI:16223, SP|P25854
Calmodulin-1/4 {Arabidopsis thaliana}
Length = 149
Score = 27.1 bits (57), Expect = 7.1
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 124 RHYDLNQAKELFESFVKEHNREYKDDADRELHYQSFKK 237
RH N ++L + V+E RE D D +++Y+ F K
Sbjct: 107 RHVMTNLGEKLTDEEVEEMIREADVDGDGQINYEEFVK 144
>At1g66410.1 68414.m07542 calmodulin-1/4 (CAM4) identical to
calmodulin [Arabidopsis thaliana] GI:16223; nearly
identical to SP|P25854 Calmodulin-1/4 {Arabidopsis
thaliana}
Length = 149
Score = 27.1 bits (57), Expect = 7.1
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 124 RHYDLNQAKELFESFVKEHNREYKDDADRELHYQSFKK 237
RH N ++L + V+E RE D D +++Y+ F K
Sbjct: 107 RHVMTNLGEKLTDEEVEEMIREADVDGDGQINYEEFVK 144
>At4g31420.2 68417.m04461 zinc finger (C2H2 type) family protein
contains Pfam profile: PF00096 zinc finger, C2H2 type
Length = 405
Score = 26.6 bits (56), Expect = 9.4
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +1
Query: 181 NREYKDDADRELHYQS 228
N E+KD+ +R LHY+S
Sbjct: 10 NMEFKDEEERNLHYKS 25
>At4g31420.1 68417.m04460 zinc finger (C2H2 type) family protein
contains Pfam profile: PF00096 zinc finger, C2H2 type
Length = 404
Score = 26.6 bits (56), Expect = 9.4
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +1
Query: 181 NREYKDDADRELHYQS 228
N E+KD+ +R LHY+S
Sbjct: 10 NMEFKDEEERNLHYKS 25
>At4g10790.1 68417.m01759 UBX domain-containing protein low
similarity to SP|Q9UNN5 FAS-associated factor 1 (FAF1
protein) {Homo sapiens}; contains Pfam profile PF00789:
UBX domain
Length = 480
Score = 26.6 bits (56), Expect = 9.4
Identities = 13/42 (30%), Positives = 25/42 (59%)
Frame = -1
Query: 423 HNTFISFGIAFR*TEVGELMSS*QAASIPTCSAVPQEYNQQI 298
+ F+S+G + R +E ++ +S +A+ P C+ V NQ+I
Sbjct: 234 NENFVSWGGSIRSSEGFKMSNSLKASRFPFCAVVMPAANQRI 275
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,389,728
Number of Sequences: 28952
Number of extensions: 172737
Number of successful extensions: 489
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 489
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 888318720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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