Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30609
         (780 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    27   3.0  
SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    27   4.0  
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce...    27   4.0  
SPBC83.14c |rfc5||DNA replication factor C complex subunit Rfc5 ...    26   7.0  
SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyce...    25   9.2  
SPBC3B8.05 |||diphthamide biosynthesis protein |Schizosaccharomy...    25   9.2  
SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S...    25   9.2  

>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2386

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
 Frame = +1

Query: 34  IQESAVSRTMMLIALFLFAAHVFNTNADDAY-LPPYIEACEFSNENLEQCIKEQIEKSLP 210
           I  S+V ++++L   F ++ H  N N +    L  +I     S     +C++    K LP
Sbjct: 544 IISSSVKQSLLLDGFFRWSQHCSNFNKESMLSLREFIMKALASTS---RCLRVVAAKVLP 600

Query: 211 EFTKGIPELDV 243
            F KG   LD+
Sbjct: 601 IFIKGPNNLDI 611


>SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 822

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +3

Query: 168 PRTVHQRTNREESA*VYEGYS*TGRSFD*PVHLDDINIDGNG 293
           P TV +   RE SA   + YS      + P++ D + +DG G
Sbjct: 736 PSTVRRHHVREVSAYGLDSYSFNMSYLEAPIYFDFVGVDGVG 777


>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 568

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +2

Query: 641 ELADTTLQFANENWQQLLDD-LAPPAIKQIVKTVVKAINKFLRAS 772
           E  +   +F  +   +LLDD +A P IKQ+    VK    F+R S
Sbjct: 368 EFLEIIEEFICQTIDRLLDDPIATPLIKQLNPDFVKPSRPFMRLS 412


>SPBC83.14c |rfc5||DNA replication factor C complex subunit Rfc5
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 358

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 11/44 (25%), Positives = 20/44 (45%)
 Frame = +2

Query: 632 GNKELADTTLQFANENWQQLLDDLAPPAIKQIVKTVVKAINKFL 763
           GNK+L DT  Q    +WQ  +  +    +++     + A+   L
Sbjct: 238 GNKQLIDTGAQLPLPDWQTFIQQVGDSMLQEQSPARILAVRSML 281


>SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 547 RKRSFKTRHSFIQIQDREDYVRFEKLV 627
           +KR    RHS  Q++D ED V  E +V
Sbjct: 16  KKRLLSRRHSSYQVRDEEDDVLEEFIV 42


>SPBC3B8.05 |||diphthamide biosynthesis protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 436

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = -1

Query: 231 RNTLRKLRQTLLYLFFDALFEVFIGEFAGFNVW 133
           +NTLRK  +  + +    +F   +G+F+  + W
Sbjct: 331 KNTLRKNNKDFVCVLMSEIFPSRLGQFSDIDAW 363


>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1052

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
 Frame = +2

Query: 509 EIESKLNQVKDNNGKDHLKLGTPSYKYKIEKTTFDLKNLFNGNKELADTTLQFANENWQQ 688
           EI S  + +    GK  LKL   S+   +     + KNL +G  +  +T+ + + EN+ +
Sbjct: 710 EIPSLFHSIWIMTGKG-LKLWL-SFSEILSSVLINTKNLIDGLPKFLNTSKRVSLENFHR 767

Query: 689 L-LDDLAPPA 715
           L ++DL  P+
Sbjct: 768 LSVEDLRSPS 777


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,096,259
Number of Sequences: 5004
Number of extensions: 64166
Number of successful extensions: 179
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)