Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30609
(780 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0714 - 5451246-5451408,5453401-5453534,5453608-5453796,545... 35 0.083
08_02_1271 - 25762750-25764276 30 1.8
11_06_0102 + 20112731-20112928,20113314-20113514,20113606-201136... 30 2.4
05_01_0299 - 2322204-2322734,2324089-2326164 29 3.1
03_06_0358 + 33366265-33366447,33367371-33367468,33367910-333689... 28 7.2
02_02_0354 + 9283886-9285505,9287158-9287251,9287817-9289915 28 7.2
02_01_0175 - 1198657-1198737,1199080-1199190,1199488-1199540,120... 28 7.2
11_08_0007 + 27551173-27551828,27552071-27552282,27553371-275535... 28 9.6
06_03_0588 + 22567820-22570802,22570917-22571269 28 9.6
>07_01_0714 -
5451246-5451408,5453401-5453534,5453608-5453796,
5454313-5454825,5455815-5456856,5457283-5457380,
5458224-5458451
Length = 788
Score = 34.7 bits (76), Expect = 0.083
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = -1
Query: 753 LIALTTVLTICLIAGGARSSRSCCQFSLANCRVVSANSL 637
L+ VL+ C AGG R++ C Q SL +C ++ A L
Sbjct: 342 LLVKRHVLSSCAAAGGLRAAAECVQISLGHCSLLEARGL 380
>08_02_1271 - 25762750-25764276
Length = 508
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = -1
Query: 756 LLIALTTVLTICLIAGGARSSRSCCQFSLANCRVVSANSLFP 631
LL+A VLT CL+A + C C V +A FP
Sbjct: 11 LLLAAAAVLTQCLLAAAVNTPVVQCASGTTKCTVTNAFGAFP 52
>11_06_0102 +
20112731-20112928,20113314-20113514,20113606-20113695,
20114269-20114457,20115375-20115387,20115824-20115990,
20117334-20117522,20118940-20119053,20120912-20121010,
20122368-20122490,20122579-20122701,20123179-20123277,
20124786-20124842,20125136-20125182,20125296-20125439,
20125540-20125717,20126318-20126398,20126480-20126563,
20126624-20126629
Length = 733
Score = 29.9 bits (64), Expect = 2.4
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +2
Query: 569 GTPSYKYKIEKTTFDLKNLFNGNKELADTTL--QFANENWQQLLDDLAPPAIKQI 727
GTP + +E+ D + E AD + QFA EN Q D PPA+ ++
Sbjct: 33 GTPEDRANVERVRRDFTDHRLRRPESADLLMRMQFARENNHQRRGDRIPPAVNKL 87
>05_01_0299 - 2322204-2322734,2324089-2326164
Length = 868
Score = 29.5 bits (63), Expect = 3.1
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Frame = -3
Query: 457 KMRSFPSASYSAVKLMLLM----KANLKFPWSPSNLSLNSFR*LPFKPCINALVNVSFNP 290
K RSF ++ S++K + A++K P P +LS LP P +A ++ + NP
Sbjct: 404 KCRSFSDSTTSSLKASSKVGKGFSASMKGPEVPPDLSFTGAA-LPSNPSFDAKLSSNLNP 462
Query: 289 LPS 281
LP+
Sbjct: 463 LPA 465
>03_06_0358 +
33366265-33366447,33367371-33367468,33367910-33368945,
33369042-33369554,33370456-33370644,33370715-33370848,
33371196-33371358
Length = 771
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = -1
Query: 753 LIALTTVLTICLIAGGARSSRSCCQFSLANCRVVSANSL 637
L+ L C+ AGG R++ C Q SL + ++ L
Sbjct: 325 LLVKRHALAACVAAGGLRAAAECIQISLGHSSLLETRGL 363
>02_02_0354 + 9283886-9285505,9287158-9287251,9287817-9289915
Length = 1270
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +1
Query: 85 FAAHVFNTNADDAYLPPYIEACEFSNENLEQCIKEQIEKSLP 210
FA H++N DAY P + C +N ++ + + ++I K +P
Sbjct: 259 FAQHLYNDKRTDAYFPIKVWVCVSTNFDVLR-LTQEILKCIP 299
>02_01_0175 -
1198657-1198737,1199080-1199190,1199488-1199540,
1200131-1200215,1200519-1200614,1200729-1200821,
1201640-1201696,1201826-1201975,1202819-1202893
Length = 266
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 4/34 (11%)
Frame = +2
Query: 575 PSYKYKIEKTTF----DLKNLFNGNKELADTTLQ 664
P YK+K+E+T F + + FNG +++ +LQ
Sbjct: 187 PEYKFKVERTNFFPQPKVNSAFNGKRKMLRKSLQ 220
>11_08_0007 +
27551173-27551828,27552071-27552282,27553371-27553550,
27555154-27556187
Length = 693
Score = 27.9 bits (59), Expect = 9.6
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +1
Query: 106 TNADDAYLPPYIEACEFSNENLEQCIKEQIEKSLPEFTKGIPEL 237
++ADDA P Y+E + +C+KE I++ P + + EL
Sbjct: 641 SSADDALRPRYMECLDRMANIAIRCLKEDIDER-PTMAEALEEL 683
>06_03_0588 + 22567820-22570802,22570917-22571269
Length = 1111
Score = 27.9 bits (59), Expect = 9.6
Identities = 20/78 (25%), Positives = 34/78 (43%)
Frame = +3
Query: 258 VHLDDINIDGNGLKLTFTKALMHGLKGSHLKEFKLKFDGDHGNFKLAFISNMSLTAEYEA 437
V L+++N+DGN L + +++ H + LK L + HG + SL+ +
Sbjct: 537 VQLNELNLDGNNLSGSIPESIHH---CAQLKTLNLAHNSLHGTIPVHIFKIFSLSEHLDL 593
Query: 438 DGKLLILQIKGKGDALIN 491
L I + LIN
Sbjct: 594 SHNYLSGGIPQEVGNLIN 611
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,550,985
Number of Sequences: 37544
Number of extensions: 391665
Number of successful extensions: 1002
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1002
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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