Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30608
(737 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26407| Best HMM Match : UQ_con (HMM E-Value=0) 155 4e-38
SB_41378| Best HMM Match : No HMM Matches (HMM E-Value=.) 97 1e-20
SB_15708| Best HMM Match : UQ_con (HMM E-Value=0) 59 4e-09
SB_44322| Best HMM Match : UQ_con (HMM E-Value=1.6e-37) 56 2e-08
SB_5638| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 2e-07
SB_26077| Best HMM Match : UQ_con (HMM E-Value=6e-18) 45 7e-05
SB_28812| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 2e-04
SB_28696| Best HMM Match : UQ_con (HMM E-Value=5.3e-30) 43 2e-04
SB_26076| Best HMM Match : UQ_con (HMM E-Value=3.6e-15) 42 4e-04
SB_26761| Best HMM Match : UQ_con (HMM E-Value=1.7e-06) 40 0.002
SB_3717| Best HMM Match : UQ_con (HMM E-Value=0.00017) 38 0.011
SB_21041| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.026
SB_33408| Best HMM Match : UQ_con (HMM E-Value=3.7e-07) 34 0.10
SB_7202| Best HMM Match : UQ_con (HMM E-Value=5.9e-05) 33 0.24
SB_33407| Best HMM Match : UQ_con (HMM E-Value=0) 33 0.24
SB_40772| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.97
SB_25516| Best HMM Match : AAA_2 (HMM E-Value=0) 31 0.97
SB_30411| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_26178| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_39170| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_35256| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_39603| Best HMM Match : HATPase_c (HMM E-Value=0.0009) 29 3.9
SB_36444| Best HMM Match : UQ_con (HMM E-Value=2.8) 28 6.9
SB_14337| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
SB_1534| Best HMM Match : zf-FPG_IleRS (HMM E-Value=6.2) 28 9.1
>SB_26407| Best HMM Match : UQ_con (HMM E-Value=0)
Length = 1282
Score = 155 bits (376), Expect = 4e-38
Identities = 63/75 (84%), Positives = 70/75 (93%)
Frame = +3
Query: 513 TLYQGGYFKAHMKFPPDYPYSPPSIRFLTKVWHPNVYENGDLCISILHPPVDDPQSGELP 692
TLY GGYFKAHM FP DYPYSPP+ RFLTK+WHPN+YE+GD+CISILHPPVDDPQSGELP
Sbjct: 1167 TLYAGGYFKAHMSFPHDYPYSPPTFRFLTKMWHPNIYESGDVCISILHPPVDDPQSGELP 1226
Query: 693 CERWNPTQSVRTVLL 737
ERWNPTQ+VRT+LL
Sbjct: 1227 SERWNPTQNVRTILL 1241
Score = 62.5 bits (145), Expect = 3e-10
Identities = 29/42 (69%), Positives = 33/42 (78%)
Frame = +1
Query: 382 SSALRALALEYKSLQEEPVEGFRVKLLGEDNLFEWEVAIFGP 507
SSA+RAL LE K L EEPVEGF V++ E N FEW+VAIFGP
Sbjct: 1123 SSAVRALQLELKKLTEEPVEGFTVEVPDESNTFEWDVAIFGP 1164
>SB_41378| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 473
Score = 97.5 bits (232), Expect = 1e-20
Identities = 38/75 (50%), Positives = 53/75 (70%)
Frame = +3
Query: 513 TLYQGGYFKAHMKFPPDYPYSPPSIRFLTKVWHPNVYENGDLCISILHPPVDDPQSGELP 692
T Y+ GYFKA M FP +YP PP++ F++ +WHPNV++NG++CISILH P +D E
Sbjct: 375 TYYEEGYFKASMVFPKEYPQRPPTLTFISDIWHPNVHKNGEVCISILHEPGEDKYGYEKA 434
Query: 693 CERWNPTQSVRTVLL 737
ERW P +V T++L
Sbjct: 435 DERWRPIHTVETIML 449
Score = 38.3 bits (85), Expect = 0.006
Identities = 13/29 (44%), Positives = 22/29 (75%)
Frame = +1
Query: 421 LQEEPVEGFRVKLLGEDNLFEWEVAIFGP 507
LQ++PVEGF L +++L++WE+ + GP
Sbjct: 344 LQKKPVEGFSAGLFDDEDLYKWEIMVVGP 372
>SB_15708| Best HMM Match : UQ_con (HMM E-Value=0)
Length = 145
Score = 58.8 bits (136), Expect = 4e-09
Identities = 21/47 (44%), Positives = 31/47 (65%)
Frame = +3
Query: 519 YQGGYFKAHMKFPPDYPYSPPSIRFLTKVWHPNVYENGDLCISILHP 659
Y G F+ + FP +YP+ PP I F TK++HPN+ E G +C+ I+ P
Sbjct: 37 YNKGAFRIEICFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPIISP 83
>SB_44322| Best HMM Match : UQ_con (HMM E-Value=1.6e-37)
Length = 190
Score = 56.4 bits (130), Expect = 2e-08
Identities = 25/74 (33%), Positives = 39/74 (52%)
Frame = +3
Query: 513 TLYQGGYFKAHMKFPPDYPYSPPSIRFLTKVWHPNVYENGDLCISILHPPVDDPQSGELP 692
T Y G FK ++ P YP+ PP +RF+T ++HPN+ +G +C+ L P P
Sbjct: 8 TPYHKGIFKLDIQIPERYPFEPPKVRFVTPIYHPNIDSSGRICLDTLKMP---------P 58
Query: 693 CERWNPTQSVRTVL 734
W P ++ +VL
Sbjct: 59 KGMWKPALNISSVL 72
>SB_5638| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 151
Score = 53.2 bits (122), Expect = 2e-07
Identities = 22/53 (41%), Positives = 35/53 (66%), Gaps = 5/53 (9%)
Frame = +3
Query: 510 DTLYQGGYFKAHMKFPPDYPYSPPSIRFLTK-----VWHPNVYENGDLCISIL 653
DT Y+GG+F ++ PPDYP PP ++ +T ++PN+Y NG +C+SI+
Sbjct: 22 DTPYEGGFFYFLIRCPPDYPIRPPRVKLMTTGSGQVRFNPNLYRNGKVCLSII 74
>SB_26077| Best HMM Match : UQ_con (HMM E-Value=6e-18)
Length = 215
Score = 44.8 bits (101), Expect = 7e-05
Identities = 20/49 (40%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Frame = +3
Query: 510 DTLYQGGYFKAHMKFPPDYPYSPPSIRFLTKVWHPNV-YENGDLCISIL 653
D Y+GG FK +K DYP +PP R + ++HPN+ ++G +C+S+L
Sbjct: 47 DGAYRGGQFKFSVK-TEDYPNTPPVPRCVNNIYHPNMDLDDGSVCLSLL 94
>SB_28812| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 385
Score = 43.2 bits (97), Expect = 2e-04
Identities = 26/76 (34%), Positives = 36/76 (47%)
Frame = +3
Query: 510 DTLYQGGYFKAHMKFPPDYPYSPPSIRFLTKVWHPNVYENGDLCISILHPPVDDPQSGEL 689
DT + GG + + PP+YP PPSI LT + + L +S HP
Sbjct: 50 DTEFAGGRYHGRIILPPEYPMKPPSIMLLTPNGRFEIGKKICLSMSAHHP---------- 99
Query: 690 PCERWNPTQSVRTVLL 737
E W P+ S+RTVL+
Sbjct: 100 --ETWQPSWSIRTVLM 113
Score = 28.7 bits (61), Expect = 5.2
Identities = 17/42 (40%), Positives = 23/42 (54%)
Frame = +1
Query: 382 SSALRALALEYKSLQEEPVEGFRVKLLGEDNLFEWEVAIFGP 507
S A++ L E K L+ E + + L EDNLFEW + GP
Sbjct: 9 SPAVKRLMREAKELRNA-TELYHAQPL-EDNLFEWHFTVRGP 48
>SB_28696| Best HMM Match : UQ_con (HMM E-Value=5.3e-30)
Length = 204
Score = 43.2 bits (97), Expect = 2e-04
Identities = 19/62 (30%), Positives = 31/62 (50%)
Frame = +3
Query: 549 KFPPDYPYSPPSIRFLTKVWHPNVYENGDLCISILHPPVDDPQSGELPCERWNPTQSVRT 728
K P+ PP +RF+T ++HPN+ +G +C+ L P P W P ++ +
Sbjct: 34 KLEASTPFEPPKVRFVTPIYHPNIDSSGRICLDTLKMP---------PKGMWKPALNISS 84
Query: 729 VL 734
VL
Sbjct: 85 VL 86
>SB_26076| Best HMM Match : UQ_con (HMM E-Value=3.6e-15)
Length = 243
Score = 42.3 bits (95), Expect = 4e-04
Identities = 20/48 (41%), Positives = 29/48 (60%)
Frame = +3
Query: 510 DTLYQGGYFKAHMKFPPDYPYSPPSIRFLTKVWHPNVYENGDLCISIL 653
D Y+GG FK ++ DYP PSI TK++HPN+ +C+S+L
Sbjct: 47 DGAYRGGQFKFSVR-TTDYPNVAPSINCKTKIYHPNMDGYDGVCMSLL 93
>SB_26761| Best HMM Match : UQ_con (HMM E-Value=1.7e-06)
Length = 739
Score = 40.3 bits (90), Expect = 0.002
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Frame = +3
Query: 507 ADTLYQGGYFKAHMKFPPDYPYSPPSIRFLTKV---WHPNVYENGDLCIS 647
A T Y G F + P +YP +PPS +L+ +PN+YE+G +CI+
Sbjct: 644 AGTPYDHGLFAFDILLPANYPDAPPSFHYLSMCNGRLNPNLYEDGKVCIT 693
>SB_3717| Best HMM Match : UQ_con (HMM E-Value=0.00017)
Length = 123
Score = 37.5 bits (83), Expect = 0.011
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = +3
Query: 510 DTLYQGGYFKAHMKFPPDYPYSPPSIRFLTKVW 608
DT + GG + + PP+YP PPSI LT VW
Sbjct: 15 DTEFAGGRYHGRIILPPEYPMKPPSIMLLT-VW 46
>SB_21041| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 269
Score = 36.3 bits (80), Expect = 0.026
Identities = 12/21 (57%), Positives = 19/21 (90%)
Frame = +3
Query: 591 FLTKVWHPNVYENGDLCISIL 653
FLTK++HPNV +NG++C++ L
Sbjct: 147 FLTKIFHPNVAKNGEICVNTL 167
>SB_33408| Best HMM Match : UQ_con (HMM E-Value=3.7e-07)
Length = 181
Score = 34.3 bits (75), Expect = 0.10
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 513 TLYQGGYFKAHMKFPPDYPYSPPSI 587
++Y+GG F + FP DYP+ PP +
Sbjct: 64 SVYEGGVFFLDIHFPTDYPFKPPKV 88
>SB_7202| Best HMM Match : UQ_con (HMM E-Value=5.9e-05)
Length = 200
Score = 33.1 bits (72), Expect = 0.24
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +3
Query: 513 TLYQGGYFKAHMKFPPDYPYSPP 581
++Y+GG F + FP DYP+ PP
Sbjct: 177 SVYEGGVFFLDIHFPSDYPFKPP 199
>SB_33407| Best HMM Match : UQ_con (HMM E-Value=0)
Length = 226
Score = 33.1 bits (72), Expect = 0.24
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +3
Query: 513 TLYQGGYFKAHMKFPPDYPYSPP 581
++Y+GG F + FP DYP+ PP
Sbjct: 137 SVYEGGVFFLDIHFPSDYPFKPP 159
>SB_40772| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 178
Score = 31.1 bits (67), Expect = 0.97
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +3
Query: 564 YPYSPPSIRFLTKVWHPNVYENG 632
+P S P ++F + V+HP ++ENG
Sbjct: 118 FPDSRPLVKFTSNVFHPQIHENG 140
>SB_25516| Best HMM Match : AAA_2 (HMM E-Value=0)
Length = 609
Score = 31.1 bits (67), Expect = 0.97
Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +1
Query: 508 RIHFIKVD-TSRHT*NSPLTTRIHHHPLG 591
+IH I VD T RH SPL+ ++ HHP G
Sbjct: 40 QIHAIAVDGTRRHANASPLSCQLLHHPTG 68
>SB_30411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 710
Score = 30.3 bits (65), Expect = 1.7
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 513 TLYQGGYFKAHMKFPPDYPYSPPSIRFLT 599
T Y+GG +K + P YP+ PSI T
Sbjct: 60 TPYEGGVWKVRVDLPEKYPFKSPSIANFT 88
>SB_26178| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 897
Score = 30.3 bits (65), Expect = 1.7
Identities = 12/40 (30%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = +3
Query: 543 HMKFPPDYPYSPPSIRFLT-KVWHPNVYENGDLCISILHP 659
++ FP ++P++PP +R L ++ V + G +C+ +L P
Sbjct: 794 NITFPENFPFAPPFMRVLAPRIEGGFVLDGGAICMELLTP 833
>SB_39170| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 79
Score = 29.5 bits (63), Expect = 3.0
Identities = 10/41 (24%), Positives = 23/41 (56%)
Frame = +3
Query: 513 TLYQGGYFKAHMKFPPDYPYSPPSIRFLTKVWHPNVYENGD 635
T+++ + + P+YP PP+++F++K+ V G+
Sbjct: 1 TVFENRIYNLKIVCGPNYPQKPPTVKFVSKINMNGVNSKGE 41
>SB_35256| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 41
Score = 29.5 bits (63), Expect = 3.0
Identities = 10/41 (24%), Positives = 23/41 (56%)
Frame = +3
Query: 513 TLYQGGYFKAHMKFPPDYPYSPPSIRFLTKVWHPNVYENGD 635
T+++ + + P+YP PP+++F++K+ V G+
Sbjct: 1 TVFENRIYNLKIVCGPNYPQKPPTVKFVSKINMNGVNSKGE 41
>SB_39603| Best HMM Match : HATPase_c (HMM E-Value=0.0009)
Length = 888
Score = 29.1 bits (62), Expect = 3.9
Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Frame = +3
Query: 567 PYSPPSIRFLTKVWHPNVYENGDLCISILHP--PVDDPQSGELPCERWNPTQSVRTV 731
PY PPSI + HP +S P D Q + R PTQ+VRT+
Sbjct: 532 PYRPPSIDSAYRTDHPTQTVRSVQTLSSTDSAYPTDSTQHRQCAPYRLYPTQTVRTI 588
>SB_36444| Best HMM Match : UQ_con (HMM E-Value=2.8)
Length = 55
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 510 DTLYQGGYFKAHMKFPPDYPYSPPSIRFLT 599
DT Y G F + FP YP PP ++ +T
Sbjct: 17 DTPYSRGCFVFDIFFPGTYPNVPPLVKLIT 46
>SB_14337| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 278
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 7/54 (12%)
Frame = +3
Query: 570 YSPPSI-----RFLTKVWHP-NVYE-NGDLCISILHPPVDDPQSGELPCERWNP 710
++PPS+ L K W+P ++++ G + +PP D G + ++WNP
Sbjct: 176 WNPPSLDDIGGSILAKQWNPPSLHDIGGSILAQQWNPPSLDDNGGSILAKQWNP 229
>SB_1534| Best HMM Match : zf-FPG_IleRS (HMM E-Value=6.2)
Length = 76
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -2
Query: 487 PTQIDCPLLAI*HGNLLQVLLADSCTPTLKP 395
P +D LAI H L + D C PT +P
Sbjct: 3 PCDLDAAALAIRHALLTAATMCDRCWPTWRP 33
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,589,772
Number of Sequences: 59808
Number of extensions: 553023
Number of successful extensions: 1407
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1402
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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