SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30606
         (641 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0093 + 702223-702348,703434-703556,703646-703702,703797-70...   109   2e-24
07_03_1141 - 24264534-24264635,24265542-24265616,24265709-242657...    99   1e-21
12_02_0477 + 19503678-19503803,19504381-19504422,19504631-195046...    98   6e-21
03_06_0030 + 31161821-31161927,31163700-31163934,31164064-311648...    97   1e-20
07_01_0904 + 7609863-7610198,7610320-7610415,7610564-7610659           54   7e-08
04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585     32   0.45 
07_03_0434 + 18175560-18175695,18176068-18176177,18176553-181766...    31   1.0  
02_05_0250 + 27153048-27154453,27154546-27154885                       31   1.0  
01_06_1303 - 36132588-36132710,36133879-36134103,36134318-361347...    30   1.4  
04_01_0576 + 7466032-7466802,7468382-7468444,7469043-7469122,746...    30   1.8  
04_04_0465 + 25427065-25427113,25428099-25428227,25428387-254284...    29   2.4  
08_02_0861 - 21974524-21975224,21975307-21975467,21975563-21976695     29   3.1  
05_01_0297 - 2314687-2316021                                           29   4.1  
03_02_0910 + 12317493-12317960,12319678-12319734,12320592-123206...    29   4.1  
08_02_0610 + 19307537-19308011,19308187-19310846                       28   5.5  
08_02_0417 - 16904476-16904662,16904846-16905029,16905150-169058...    28   5.5  
04_01_0031 + 381389-381841                                             28   7.2  
03_03_0008 - 13674602-13674708,13675272-13675439,13676169-136767...    27   9.6  
02_01_0363 - 2612873-2613814                                           27   9.6  
02_01_0358 - 2575858-2576796                                           27   9.6  

>07_01_0093 +
           702223-702348,703434-703556,703646-703702,703797-703871,
           704105-704212
          Length = 162

 Score =  109 bits (261), Expect = 2e-24
 Identities = 47/77 (61%), Positives = 60/77 (77%), Gaps = 1/77 (1%)
 Frame = +2

Query: 53  MGDIEDTHFET-GDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKXH 229
           M D E+ HFE+  D+GAS T+P Q   +RKNG++++K RPCK+VE+STSKTGKHGHAK H
Sbjct: 1   MSDSEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCH 60

Query: 230 LVGIDIFNVKSMKKSVP 280
            VGIDIFN K ++  VP
Sbjct: 61  FVGIDIFNGKKLEDIVP 77



 Score = 95.5 bits (227), Expect = 3e-20
 Identities = 42/88 (47%), Positives = 66/88 (75%), Gaps = 2/88 (2%)
 Frame = +1

Query: 256 KKYEEICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIP-DGDLGTQLR 432
           KK E+I PS+HN DVPHV R DYQL DIS+DG+++L+ ++G+ ++DL++P D  L  Q++
Sbjct: 70  KKLEDIVPSSHNCDVPHVDRTDYQLIDISEDGFVSLLTESGNTKDDLRLPTDDTLTNQIK 129

Query: 433 TDF-DSGKELLCTVLKSCGEECVIAVKQ 513
             F + GK+++ TV+ + GEE + AVK+
Sbjct: 130 NGFGEEGKDMILTVMSAMGEEQICAVKE 157


>07_03_1141 -
           24264534-24264635,24265542-24265616,24265709-24265765,
           24265903-24266025,24266509-24266520,24267014-24267157,
           24267606-24267626
          Length = 177

 Score =   99 bits (238), Expect = 1e-21
 Identities = 46/81 (56%), Positives = 59/81 (72%), Gaps = 5/81 (6%)
 Frame = +2

Query: 53  MGDIEDTHFET-GDSGASATFPMQCSALRKNGFVMLKGRPCK----IVEMSTSKTGKHGH 217
           M D E+ HFE+  D+GAS T+P Q   +RKNG++++K RPCK    +VE+STSKTGKHGH
Sbjct: 14  MSDSEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKGFGKVVEVSTSKTGKHGH 73

Query: 218 AKXHLVGIDIFNVKSMKKSVP 280
           AK H V IDIFN K ++  VP
Sbjct: 74  AKCHFVAIDIFNGKKLEDIVP 94



 Score = 96.7 bits (230), Expect = 1e-20
 Identities = 42/86 (48%), Positives = 65/86 (75%), Gaps = 1/86 (1%)
 Frame = +1

Query: 256 KKYEEICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIP-DGDLGTQLR 432
           KK E+I PS+HN DVPHV R +YQL DIS+DG+++L+ ++G+ ++DL++P D  L  Q++
Sbjct: 87  KKLEDIVPSSHNCDVPHVNRTEYQLIDISEDGFVSLLTESGNTKDDLRLPTDDSLLGQIK 146

Query: 433 TDFDSGKELLCTVLKSCGEECVIAVK 510
           T F  GK+L+ TV+ + GEE + A+K
Sbjct: 147 TGFGEGKDLVVTVMSAMGEEQICALK 172


>12_02_0477 +
           19503678-19503803,19504381-19504422,19504631-19504684,
           19504946-19505068,19505154-19505210,19505299-19505373,
           19505925-19506026
          Length = 192

 Score = 97.9 bits (233), Expect = 6e-21
 Identities = 42/86 (48%), Positives = 66/86 (76%), Gaps = 1/86 (1%)
 Frame = +1

Query: 256 KKYEEICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIP-DGDLGTQLR 432
           KK E+I PS+HN DVPHV R +YQL DIS+DG+++L+ +NG+ ++DL++P D +L +Q++
Sbjct: 102 KKLEDIVPSSHNCDVPHVNRTEYQLIDISEDGFVSLLTENGNTKDDLRLPTDDNLLSQIK 161

Query: 433 TDFDSGKELLCTVLKSCGEECVIAVK 510
             F  GK+L+ TV+ + GEE + A+K
Sbjct: 162 DGFGEGKDLVVTVMSAMGEEQICALK 187



 Score = 56.4 bits (130), Expect(2) = 6e-19
 Identities = 24/36 (66%), Positives = 28/36 (77%)
 Frame = +2

Query: 173 KIVEMSTSKTGKHGHAKXHLVGIDIFNVKSMKKSVP 280
           K+VE+STSKTGKHGHAK H V IDIF  K ++  VP
Sbjct: 74  KVVEVSTSKTGKHGHAKCHFVAIDIFTAKKLEDIVP 109



 Score = 55.2 bits (127), Expect(2) = 6e-19
 Identities = 22/42 (52%), Positives = 31/42 (73%), Gaps = 1/42 (2%)
 Frame = +2

Query: 53  MGDIEDTHFET-GDSGASATFPMQCSALRKNGFVMLKGRPCK 175
           M D E+ HFE+  D+GAS T+P Q   +RKNG++++K RPCK
Sbjct: 1   MSDSEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCK 42


>03_06_0030 + 31161821-31161927,31163700-31163934,31164064-31164826,
            31165816-31167650,31169294-31169424,31169993-31170075,
            31170426-31170680,31171125-31171220,31171695-31171775,
            31171811-31171968,31172434-31172534,31172614-31172629,
            31173390-31173439,31174558-31174588,31175156-31175305,
            31176135-31176173,31176288-31176410,31176496-31176552,
            31176837-31176911,31177003-31177107
          Length = 1496

 Score = 96.7 bits (230), Expect = 1e-20
 Identities = 43/86 (50%), Positives = 64/86 (74%), Gaps = 1/86 (1%)
 Frame = +1

Query: 256  KKYEEICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIP-DGDLGTQLR 432
            KK E+I PS+HN DVPHV R DYQL DIS+DG+++L+ ++G  ++DL++P D  L TQ++
Sbjct: 1405 KKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTESGGTKDDLRLPSDEALLTQIK 1464

Query: 433  TDFDSGKELLCTVLKSCGEECVIAVK 510
              F  GK+L+ TV+ + GEE + A+K
Sbjct: 1465 DGFAEGKDLIVTVMSAMGEEQICALK 1490



 Score = 91.1 bits (216), Expect = 7e-19
 Identities = 46/90 (51%), Positives = 58/90 (64%), Gaps = 14/90 (15%)
 Frame = +2

Query: 53   MGDIEDTHFET-GDSGASATFPMQCSALRKNGFVMLKGRPCK-------------IVEMS 190
            M D E+ HFE+  D+GAS T+P Q   +RKNG +++K RPCK             +VE+S
Sbjct: 1323 MSDSEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKWSGNHASLLVDTKVVEVS 1382

Query: 191  TSKTGKHGHAKXHLVGIDIFNVKSMKKSVP 280
            TSKTGKHGHAK H V IDIFN K ++  VP
Sbjct: 1383 TSKTGKHGHAKCHFVAIDIFNGKKLEDIVP 1412


>07_01_0904 + 7609863-7610198,7610320-7610415,7610564-7610659
          Length = 175

 Score = 54.4 bits (125), Expect = 7e-08
 Identities = 25/63 (39%), Positives = 45/63 (71%), Gaps = 2/63 (3%)
 Frame = +1

Query: 304 HVKREDYQLTDISDDG-YLTLMADNGDLREDLKIPDGD-LGTQLRTDFDSGKELLCTVLK 477
           H+ R +YQL DIS+DG +++L+ ++G+ ++DL +P  D L  Q++T F  GK+++ TV+ 
Sbjct: 46  HMNRTNYQLIDISEDGLFVSLLTESGNTKDDLGLPTYDNLLGQIKTGFGEGKDVVVTVMS 105

Query: 478 SCG 486
           + G
Sbjct: 106 AMG 108


>04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585
          Length = 268

 Score = 31.9 bits (69), Expect = 0.45
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = +3

Query: 93  PGPQPPSPCNVRPCVKTVSLC-*RVVHAR*LKCPHPKPE 206
           P PQPP PC   PC K    C  +  H    + P PKP+
Sbjct: 81  PLPQPPPPCKPPPCEKPPEDCKPKPCHCCSCEKPKPKPK 119


>07_03_0434 +
           18175560-18175695,18176068-18176177,18176553-18176616,
           18176839-18176915,18177152-18177223,18178337-18178456
          Length = 192

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 14/40 (35%), Positives = 25/40 (62%)
 Frame = +1

Query: 295 DVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDGD 414
           D P+  RE +++  ++ D Y+T   D+G L ED+K+  G+
Sbjct: 38  DFPNFIREGFEVKVVTSDNYIT--RDSGLLYEDIKVGTGN 75


>02_05_0250 + 27153048-27154453,27154546-27154885
          Length = 581

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 21/57 (36%), Positives = 25/57 (43%)
 Frame = +1

Query: 367 ADNGDLREDLKIPDGDLGTQLRTDFDSGKELLCTVLKSCGEECVIAVKQTQLSTNKP 537
           A  GD   DL IPD +  TQ+ T+  S     C V  S G  C  AV  +   T  P
Sbjct: 248 ASTGDRSVDLPIPDNETNTQI-TEMRSNGAEKCDVQLSGGTLCSEAVPASNSETVCP 303


>01_06_1303 -
           36132588-36132710,36133879-36134103,36134318-36134713,
           36135352-36135547,36135591-36135740,36135818-36135924,
           36135987-36136094,36136354-36136435,36136436-36136536,
           36136778-36136996,36137455-36137583,36137665-36137742,
           36137816-36137929,36138071-36138230,36139224-36139441
          Length = 801

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 19/59 (32%), Positives = 27/59 (45%)
 Frame = +2

Query: 14  HIIPDRC*IQNTTMGDIEDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMS 190
           H+      +Q  ++ D E  H  T     +ATFPM    L  N   + +GR CK V +S
Sbjct: 423 HVADPTSLVQPRSIIDREAMHRGTSIFLPTATFPMFPERLAMNAMSLQQGRGCKSVTVS 481


>04_01_0576 +
           7466032-7466802,7468382-7468444,7469043-7469122,
           7469505-7469622,7470035-7470067,7470400-7470474,
           7470887-7471043,7471142-7471230,7472041-7472294,
           7472977-7473148,7473250-7473333,7473626-7473730,
           7474055-7474363,7474622-7474756,7476236-7476317,
           7476423-7476502,7476622-7476783,7477071-7477138,
           7478422-7478502,7478634-7478760,7478816-7478879,
           7480808-7480854,7481042-7481335
          Length = 1149

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 54  WVTSKTHTLRPETPGPQPPSPCNV 125
           W+T    T  P+ P P PP PC+V
Sbjct: 52  WLTWPPPTPLPDAPPPPPPHPCDV 75


>04_04_0465 +
           25427065-25427113,25428099-25428227,25428387-25428479,
           25428681-25428953,25429037-25429288,25429735-25430118,
           25430243-25430483,25431986-25432736
          Length = 723

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +3

Query: 3   PVGHISFLTVVKFKTQQWVTSKTHTLRPETPGPQP-PSPCNVRPCVK 140
           P+G  S  T+  +    W  +  H+L    P P P P+P   RP ++
Sbjct: 18  PLGTASSTTIASYLLGLWSRAHRHSLPAPAPAPAPAPAPETHRPGIR 64


>08_02_0861 - 21974524-21975224,21975307-21975467,21975563-21976695
          Length = 664

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +1

Query: 403 PDGDLGTQLRTDFDSGKELLCTVLKSCGE 489
           PDGDL  ++R   +SGKEL    L   G+
Sbjct: 206 PDGDLKDKMRDAMESGKELTSNALALIGK 234


>05_01_0297 - 2314687-2316021
          Length = 444

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 20/53 (37%), Positives = 28/53 (52%)
 Frame = +1

Query: 328 LTDISDDGYLTLMADNGDLREDLKIPDGDLGTQLRTDFDSGKELLCTVLKSCG 486
           + D + +G L + AD  D+R +    DGD G +LR  F S  +LL  V  S G
Sbjct: 91  VVDCTGEGVLFVEAD-ADVRLEELEEDGDGGGELRPPFPSMDQLLLDVEGSGG 142


>03_02_0910 +
           12317493-12317960,12319678-12319734,12320592-12320666,
           12321219-12321299,12321472-12321546,12321818-12321862,
           12321975-12322064,12322153-12322254,12322366-12322420,
           12324966-12325027,12325521-12325555,12325877-12326115,
           12326219-12328035
          Length = 1066

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
 Frame = +1

Query: 265 EEICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLRED--LKIPDGDLGTQLRTD 438
           EEI P+ + MD+   + E Y +  I+++     +   GD+  +  L +P+ +L     + 
Sbjct: 571 EEIPPNANGMDIDSDREETYNVEGIAENSEDCRVRGGGDIDTECNLSLPEHELPLHQESK 630

Query: 439 FDS 447
            DS
Sbjct: 631 SDS 633


>08_02_0610 + 19307537-19308011,19308187-19310846
          Length = 1044

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -2

Query: 76  VCVFDVTHCCVLNLTTVRNDM 14
           VC FD+  CC L   T+ NDM
Sbjct: 836 VCHFDLRTCCALPPATLENDM 856


>08_02_0417 -
           16904476-16904662,16904846-16905029,16905150-16905897,
           16906003-16906227,16906318-16906485,16906803-16907453
          Length = 720

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 25/90 (27%), Positives = 35/90 (38%)
 Frame = +3

Query: 60  TSKTHTLRPETPGPQPPSPCNVRPCVKTVSLC*RVVHAR*LKCPHPKPESTATLXFTWLG 239
           +S T +    TP P PPSP   +     V L    V A       P P +T++L     G
Sbjct: 544 SSATPSPTARTPSPAPPSPIATKTSTSVV-LSLAAVRATSPATSSP-PRATSSLPLVGAG 601

Query: 240 LISSM*KV*RNLSLHTQHGRTPREARRLPT 329
                    +N     Q G +  EA++L T
Sbjct: 602 SSGPSTHEKKNRKKRAQKGDSDVEAKKLKT 631


>04_01_0031 + 381389-381841
          Length = 150

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 5/35 (14%)
 Frame = +3

Query: 42  KTQQWVTSKTHTLR-----PETPGPQPPSPCNVRP 131
           + ++W T +T TLR     P+T  P PP P    P
Sbjct: 69  RERRWCTPRTSTLRREWALPDTASPPPPLPLEPAP 103


>03_03_0008 - 13674602-13674708,13675272-13675439,13676169-13676787,
            13676868-13677330,13677855-13678036,13678093-13678235,
            13678315-13678423,13679000-13679456,13680490-13682473,
            13682507-13682626,13682920-13682971
          Length = 1467

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +3

Query: 60   TSKTHTLRPETPGPQPPSP 116
            TS  HTL P  P  +PPSP
Sbjct: 1108 TSDRHTLGPPLPDDRPPSP 1126


>02_01_0363 - 2612873-2613814
          Length = 313

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +3

Query: 45  TQQWVTSKTHTLRPETPGPQPPSPC 119
           + +W     +  +P  P P PPSPC
Sbjct: 96  SDKWEVGDNYLWQPLPPPPPPPSPC 120


>02_01_0358 - 2575858-2576796
          Length = 312

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +3

Query: 45  TQQWVTSKTHTLRPETPGPQPPSPC 119
           + +W     +  +P  P P PPSPC
Sbjct: 96  SDKWEVGDNYLWQPLPPPPPPPSPC 120


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,436,070
Number of Sequences: 37544
Number of extensions: 391210
Number of successful extensions: 1421
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1407
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -