Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30606
(641 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0093 + 702223-702348,703434-703556,703646-703702,703797-70... 109 2e-24
07_03_1141 - 24264534-24264635,24265542-24265616,24265709-242657... 99 1e-21
12_02_0477 + 19503678-19503803,19504381-19504422,19504631-195046... 98 6e-21
03_06_0030 + 31161821-31161927,31163700-31163934,31164064-311648... 97 1e-20
07_01_0904 + 7609863-7610198,7610320-7610415,7610564-7610659 54 7e-08
04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585 32 0.45
07_03_0434 + 18175560-18175695,18176068-18176177,18176553-181766... 31 1.0
02_05_0250 + 27153048-27154453,27154546-27154885 31 1.0
01_06_1303 - 36132588-36132710,36133879-36134103,36134318-361347... 30 1.4
04_01_0576 + 7466032-7466802,7468382-7468444,7469043-7469122,746... 30 1.8
04_04_0465 + 25427065-25427113,25428099-25428227,25428387-254284... 29 2.4
08_02_0861 - 21974524-21975224,21975307-21975467,21975563-21976695 29 3.1
05_01_0297 - 2314687-2316021 29 4.1
03_02_0910 + 12317493-12317960,12319678-12319734,12320592-123206... 29 4.1
08_02_0610 + 19307537-19308011,19308187-19310846 28 5.5
08_02_0417 - 16904476-16904662,16904846-16905029,16905150-169058... 28 5.5
04_01_0031 + 381389-381841 28 7.2
03_03_0008 - 13674602-13674708,13675272-13675439,13676169-136767... 27 9.6
02_01_0363 - 2612873-2613814 27 9.6
02_01_0358 - 2575858-2576796 27 9.6
>07_01_0093 +
702223-702348,703434-703556,703646-703702,703797-703871,
704105-704212
Length = 162
Score = 109 bits (261), Expect = 2e-24
Identities = 47/77 (61%), Positives = 60/77 (77%), Gaps = 1/77 (1%)
Frame = +2
Query: 53 MGDIEDTHFET-GDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKXH 229
M D E+ HFE+ D+GAS T+P Q +RKNG++++K RPCK+VE+STSKTGKHGHAK H
Sbjct: 1 MSDSEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCH 60
Query: 230 LVGIDIFNVKSMKKSVP 280
VGIDIFN K ++ VP
Sbjct: 61 FVGIDIFNGKKLEDIVP 77
Score = 95.5 bits (227), Expect = 3e-20
Identities = 42/88 (47%), Positives = 66/88 (75%), Gaps = 2/88 (2%)
Frame = +1
Query: 256 KKYEEICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIP-DGDLGTQLR 432
KK E+I PS+HN DVPHV R DYQL DIS+DG+++L+ ++G+ ++DL++P D L Q++
Sbjct: 70 KKLEDIVPSSHNCDVPHVDRTDYQLIDISEDGFVSLLTESGNTKDDLRLPTDDTLTNQIK 129
Query: 433 TDF-DSGKELLCTVLKSCGEECVIAVKQ 513
F + GK+++ TV+ + GEE + AVK+
Sbjct: 130 NGFGEEGKDMILTVMSAMGEEQICAVKE 157
>07_03_1141 -
24264534-24264635,24265542-24265616,24265709-24265765,
24265903-24266025,24266509-24266520,24267014-24267157,
24267606-24267626
Length = 177
Score = 99 bits (238), Expect = 1e-21
Identities = 46/81 (56%), Positives = 59/81 (72%), Gaps = 5/81 (6%)
Frame = +2
Query: 53 MGDIEDTHFET-GDSGASATFPMQCSALRKNGFVMLKGRPCK----IVEMSTSKTGKHGH 217
M D E+ HFE+ D+GAS T+P Q +RKNG++++K RPCK +VE+STSKTGKHGH
Sbjct: 14 MSDSEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKGFGKVVEVSTSKTGKHGH 73
Query: 218 AKXHLVGIDIFNVKSMKKSVP 280
AK H V IDIFN K ++ VP
Sbjct: 74 AKCHFVAIDIFNGKKLEDIVP 94
Score = 96.7 bits (230), Expect = 1e-20
Identities = 42/86 (48%), Positives = 65/86 (75%), Gaps = 1/86 (1%)
Frame = +1
Query: 256 KKYEEICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIP-DGDLGTQLR 432
KK E+I PS+HN DVPHV R +YQL DIS+DG+++L+ ++G+ ++DL++P D L Q++
Sbjct: 87 KKLEDIVPSSHNCDVPHVNRTEYQLIDISEDGFVSLLTESGNTKDDLRLPTDDSLLGQIK 146
Query: 433 TDFDSGKELLCTVLKSCGEECVIAVK 510
T F GK+L+ TV+ + GEE + A+K
Sbjct: 147 TGFGEGKDLVVTVMSAMGEEQICALK 172
>12_02_0477 +
19503678-19503803,19504381-19504422,19504631-19504684,
19504946-19505068,19505154-19505210,19505299-19505373,
19505925-19506026
Length = 192
Score = 97.9 bits (233), Expect = 6e-21
Identities = 42/86 (48%), Positives = 66/86 (76%), Gaps = 1/86 (1%)
Frame = +1
Query: 256 KKYEEICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIP-DGDLGTQLR 432
KK E+I PS+HN DVPHV R +YQL DIS+DG+++L+ +NG+ ++DL++P D +L +Q++
Sbjct: 102 KKLEDIVPSSHNCDVPHVNRTEYQLIDISEDGFVSLLTENGNTKDDLRLPTDDNLLSQIK 161
Query: 433 TDFDSGKELLCTVLKSCGEECVIAVK 510
F GK+L+ TV+ + GEE + A+K
Sbjct: 162 DGFGEGKDLVVTVMSAMGEEQICALK 187
Score = 56.4 bits (130), Expect(2) = 6e-19
Identities = 24/36 (66%), Positives = 28/36 (77%)
Frame = +2
Query: 173 KIVEMSTSKTGKHGHAKXHLVGIDIFNVKSMKKSVP 280
K+VE+STSKTGKHGHAK H V IDIF K ++ VP
Sbjct: 74 KVVEVSTSKTGKHGHAKCHFVAIDIFTAKKLEDIVP 109
Score = 55.2 bits (127), Expect(2) = 6e-19
Identities = 22/42 (52%), Positives = 31/42 (73%), Gaps = 1/42 (2%)
Frame = +2
Query: 53 MGDIEDTHFET-GDSGASATFPMQCSALRKNGFVMLKGRPCK 175
M D E+ HFE+ D+GAS T+P Q +RKNG++++K RPCK
Sbjct: 1 MSDSEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCK 42
>03_06_0030 + 31161821-31161927,31163700-31163934,31164064-31164826,
31165816-31167650,31169294-31169424,31169993-31170075,
31170426-31170680,31171125-31171220,31171695-31171775,
31171811-31171968,31172434-31172534,31172614-31172629,
31173390-31173439,31174558-31174588,31175156-31175305,
31176135-31176173,31176288-31176410,31176496-31176552,
31176837-31176911,31177003-31177107
Length = 1496
Score = 96.7 bits (230), Expect = 1e-20
Identities = 43/86 (50%), Positives = 64/86 (74%), Gaps = 1/86 (1%)
Frame = +1
Query: 256 KKYEEICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIP-DGDLGTQLR 432
KK E+I PS+HN DVPHV R DYQL DIS+DG+++L+ ++G ++DL++P D L TQ++
Sbjct: 1405 KKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTESGGTKDDLRLPSDEALLTQIK 1464
Query: 433 TDFDSGKELLCTVLKSCGEECVIAVK 510
F GK+L+ TV+ + GEE + A+K
Sbjct: 1465 DGFAEGKDLIVTVMSAMGEEQICALK 1490
Score = 91.1 bits (216), Expect = 7e-19
Identities = 46/90 (51%), Positives = 58/90 (64%), Gaps = 14/90 (15%)
Frame = +2
Query: 53 MGDIEDTHFET-GDSGASATFPMQCSALRKNGFVMLKGRPCK-------------IVEMS 190
M D E+ HFE+ D+GAS T+P Q +RKNG +++K RPCK +VE+S
Sbjct: 1323 MSDSEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKWSGNHASLLVDTKVVEVS 1382
Query: 191 TSKTGKHGHAKXHLVGIDIFNVKSMKKSVP 280
TSKTGKHGHAK H V IDIFN K ++ VP
Sbjct: 1383 TSKTGKHGHAKCHFVAIDIFNGKKLEDIVP 1412
>07_01_0904 + 7609863-7610198,7610320-7610415,7610564-7610659
Length = 175
Score = 54.4 bits (125), Expect = 7e-08
Identities = 25/63 (39%), Positives = 45/63 (71%), Gaps = 2/63 (3%)
Frame = +1
Query: 304 HVKREDYQLTDISDDG-YLTLMADNGDLREDLKIPDGD-LGTQLRTDFDSGKELLCTVLK 477
H+ R +YQL DIS+DG +++L+ ++G+ ++DL +P D L Q++T F GK+++ TV+
Sbjct: 46 HMNRTNYQLIDISEDGLFVSLLTESGNTKDDLGLPTYDNLLGQIKTGFGEGKDVVVTVMS 105
Query: 478 SCG 486
+ G
Sbjct: 106 AMG 108
>04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585
Length = 268
Score = 31.9 bits (69), Expect = 0.45
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = +3
Query: 93 PGPQPPSPCNVRPCVKTVSLC-*RVVHAR*LKCPHPKPE 206
P PQPP PC PC K C + H + P PKP+
Sbjct: 81 PLPQPPPPCKPPPCEKPPEDCKPKPCHCCSCEKPKPKPK 119
>07_03_0434 +
18175560-18175695,18176068-18176177,18176553-18176616,
18176839-18176915,18177152-18177223,18178337-18178456
Length = 192
Score = 30.7 bits (66), Expect = 1.0
Identities = 14/40 (35%), Positives = 25/40 (62%)
Frame = +1
Query: 295 DVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDGD 414
D P+ RE +++ ++ D Y+T D+G L ED+K+ G+
Sbjct: 38 DFPNFIREGFEVKVVTSDNYIT--RDSGLLYEDIKVGTGN 75
>02_05_0250 + 27153048-27154453,27154546-27154885
Length = 581
Score = 30.7 bits (66), Expect = 1.0
Identities = 21/57 (36%), Positives = 25/57 (43%)
Frame = +1
Query: 367 ADNGDLREDLKIPDGDLGTQLRTDFDSGKELLCTVLKSCGEECVIAVKQTQLSTNKP 537
A GD DL IPD + TQ+ T+ S C V S G C AV + T P
Sbjct: 248 ASTGDRSVDLPIPDNETNTQI-TEMRSNGAEKCDVQLSGGTLCSEAVPASNSETVCP 303
>01_06_1303 -
36132588-36132710,36133879-36134103,36134318-36134713,
36135352-36135547,36135591-36135740,36135818-36135924,
36135987-36136094,36136354-36136435,36136436-36136536,
36136778-36136996,36137455-36137583,36137665-36137742,
36137816-36137929,36138071-36138230,36139224-36139441
Length = 801
Score = 30.3 bits (65), Expect = 1.4
Identities = 19/59 (32%), Positives = 27/59 (45%)
Frame = +2
Query: 14 HIIPDRC*IQNTTMGDIEDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMS 190
H+ +Q ++ D E H T +ATFPM L N + +GR CK V +S
Sbjct: 423 HVADPTSLVQPRSIIDREAMHRGTSIFLPTATFPMFPERLAMNAMSLQQGRGCKSVTVS 481
>04_01_0576 +
7466032-7466802,7468382-7468444,7469043-7469122,
7469505-7469622,7470035-7470067,7470400-7470474,
7470887-7471043,7471142-7471230,7472041-7472294,
7472977-7473148,7473250-7473333,7473626-7473730,
7474055-7474363,7474622-7474756,7476236-7476317,
7476423-7476502,7476622-7476783,7477071-7477138,
7478422-7478502,7478634-7478760,7478816-7478879,
7480808-7480854,7481042-7481335
Length = 1149
Score = 29.9 bits (64), Expect = 1.8
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3
Query: 54 WVTSKTHTLRPETPGPQPPSPCNV 125
W+T T P+ P P PP PC+V
Sbjct: 52 WLTWPPPTPLPDAPPPPPPHPCDV 75
>04_04_0465 +
25427065-25427113,25428099-25428227,25428387-25428479,
25428681-25428953,25429037-25429288,25429735-25430118,
25430243-25430483,25431986-25432736
Length = 723
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = +3
Query: 3 PVGHISFLTVVKFKTQQWVTSKTHTLRPETPGPQP-PSPCNVRPCVK 140
P+G S T+ + W + H+L P P P P+P RP ++
Sbjct: 18 PLGTASSTTIASYLLGLWSRAHRHSLPAPAPAPAPAPAPETHRPGIR 64
>08_02_0861 - 21974524-21975224,21975307-21975467,21975563-21976695
Length = 664
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +1
Query: 403 PDGDLGTQLRTDFDSGKELLCTVLKSCGE 489
PDGDL ++R +SGKEL L G+
Sbjct: 206 PDGDLKDKMRDAMESGKELTSNALALIGK 234
>05_01_0297 - 2314687-2316021
Length = 444
Score = 28.7 bits (61), Expect = 4.1
Identities = 20/53 (37%), Positives = 28/53 (52%)
Frame = +1
Query: 328 LTDISDDGYLTLMADNGDLREDLKIPDGDLGTQLRTDFDSGKELLCTVLKSCG 486
+ D + +G L + AD D+R + DGD G +LR F S +LL V S G
Sbjct: 91 VVDCTGEGVLFVEAD-ADVRLEELEEDGDGGGELRPPFPSMDQLLLDVEGSGG 142
>03_02_0910 +
12317493-12317960,12319678-12319734,12320592-12320666,
12321219-12321299,12321472-12321546,12321818-12321862,
12321975-12322064,12322153-12322254,12322366-12322420,
12324966-12325027,12325521-12325555,12325877-12326115,
12326219-12328035
Length = 1066
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = +1
Query: 265 EEICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLRED--LKIPDGDLGTQLRTD 438
EEI P+ + MD+ + E Y + I+++ + GD+ + L +P+ +L +
Sbjct: 571 EEIPPNANGMDIDSDREETYNVEGIAENSEDCRVRGGGDIDTECNLSLPEHELPLHQESK 630
Query: 439 FDS 447
DS
Sbjct: 631 SDS 633
>08_02_0610 + 19307537-19308011,19308187-19310846
Length = 1044
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -2
Query: 76 VCVFDVTHCCVLNLTTVRNDM 14
VC FD+ CC L T+ NDM
Sbjct: 836 VCHFDLRTCCALPPATLENDM 856
>08_02_0417 -
16904476-16904662,16904846-16905029,16905150-16905897,
16906003-16906227,16906318-16906485,16906803-16907453
Length = 720
Score = 28.3 bits (60), Expect = 5.5
Identities = 25/90 (27%), Positives = 35/90 (38%)
Frame = +3
Query: 60 TSKTHTLRPETPGPQPPSPCNVRPCVKTVSLC*RVVHAR*LKCPHPKPESTATLXFTWLG 239
+S T + TP P PPSP + V L V A P P +T++L G
Sbjct: 544 SSATPSPTARTPSPAPPSPIATKTSTSVV-LSLAAVRATSPATSSP-PRATSSLPLVGAG 601
Query: 240 LISSM*KV*RNLSLHTQHGRTPREARRLPT 329
+N Q G + EA++L T
Sbjct: 602 SSGPSTHEKKNRKKRAQKGDSDVEAKKLKT 631
>04_01_0031 + 381389-381841
Length = 150
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 5/35 (14%)
Frame = +3
Query: 42 KTQQWVTSKTHTLR-----PETPGPQPPSPCNVRP 131
+ ++W T +T TLR P+T P PP P P
Sbjct: 69 RERRWCTPRTSTLRREWALPDTASPPPPLPLEPAP 103
>03_03_0008 - 13674602-13674708,13675272-13675439,13676169-13676787,
13676868-13677330,13677855-13678036,13678093-13678235,
13678315-13678423,13679000-13679456,13680490-13682473,
13682507-13682626,13682920-13682971
Length = 1467
Score = 27.5 bits (58), Expect = 9.6
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +3
Query: 60 TSKTHTLRPETPGPQPPSP 116
TS HTL P P +PPSP
Sbjct: 1108 TSDRHTLGPPLPDDRPPSP 1126
>02_01_0363 - 2612873-2613814
Length = 313
Score = 27.5 bits (58), Expect = 9.6
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = +3
Query: 45 TQQWVTSKTHTLRPETPGPQPPSPC 119
+ +W + +P P P PPSPC
Sbjct: 96 SDKWEVGDNYLWQPLPPPPPPPSPC 120
>02_01_0358 - 2575858-2576796
Length = 312
Score = 27.5 bits (58), Expect = 9.6
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = +3
Query: 45 TQQWVTSKTHTLRPETPGPQPPSPC 119
+ +W + +P P P PPSPC
Sbjct: 96 SDKWEVGDNYLWQPLPPPPPPPSPC 120
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,436,070
Number of Sequences: 37544
Number of extensions: 391210
Number of successful extensions: 1421
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1407
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -