Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30606
         (641 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27207| Best HMM Match : eIF-5a (HMM E-Value=3.1e-15)                97   1e-20
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.80 
SB_14043| Best HMM Match : Extensin_1 (HMM E-Value=0.75)               29   2.4  
SB_53582| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_7383| Best HMM Match : SapA (HMM E-Value=1.2e-13)                   28   5.6  
SB_43823| Best HMM Match : MAM (HMM E-Value=0)                         28   5.6  
SB_6893| Best HMM Match : PPV_E2_C (HMM E-Value=0.94)                  28   5.6  
SB_6613| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.4  
SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.4  
SB_30225| Best HMM Match : Peptidase_S8 (HMM E-Value=0.0034)           25   8.2  

>SB_27207| Best HMM Match : eIF-5a (HMM E-Value=3.1e-15)
          Length = 710

 Score = 97.1 bits (231), Expect = 1e-20
 Identities = 42/59 (71%), Positives = 50/59 (84%)
 Frame = +2

Query: 47  TTMGDIEDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAK 223
           T   ++ DT F +G+SGAS T+P QCS+LRKNG V++KGRPCKIVEMSTSKTGKHGHAK
Sbjct: 585 TMAEELADTEFHSGESGASDTYPAQCSSLRKNGHVVIKGRPCKIVEMSTSKTGKHGHAK 643



 Score = 70.5 bits (165), Expect = 1e-12
 Identities = 29/62 (46%), Positives = 44/62 (70%)
 Frame = +1

Query: 325 QLTDISDDGYLTLMADNGDLREDLKIPDGDLGTQLRTDFDSGKELLCTVLKSCGEECVIA 504
           ++T+I +DGYL LM DNGD R D+K+ D D+  ++R  F++ +  + TVLK+ GEE V+ 
Sbjct: 643 KVTNIEEDGYLELMDDNGDTRADIKLQDNDIAKEIRAKFEASENFMVTVLKAMGEETVVG 702

Query: 505 VK 510
           VK
Sbjct: 703 VK 704


>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2870

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = -1

Query: 524  ESC--VCLTAMTHSSPQDFSTVHNNSLPLSKSVRNCVPRSPS 405
            +SC  +C T+   S P    + H+N+ P   S  NC P  PS
Sbjct: 1285 QSCPKICFTSCKPSCPVHCCSEHSNACPQECSTDNCKPSCPS 1326


>SB_14043| Best HMM Match : Extensin_1 (HMM E-Value=0.75)
          Length = 568

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +3

Query: 12  HISFLTVVKFKTQQWVTSKTHTLRPETPGPQPPSPCNVRPC 134
           H   L   K KT +  T+K +T +P T  P+   P   +PC
Sbjct: 92  HTIKLYTTKPKTTKPHTNKPYTTKPRTTKPRTTKPHTTKPC 132



 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +3

Query: 60  TSKTHTLRPETPGPQPPSPCNVRPCVKTVSLC*RVVH 170
           T+K HT +P T  P    P N+ P + + +L   ++H
Sbjct: 168 TTKPHTTKPHTTKPHTTKPHNIDPTLPSPTLLNALLH 204


>SB_53582| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 393

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 19/52 (36%), Positives = 25/52 (48%)
 Frame = +3

Query: 48  QQWVTSKTHTLRPETPGPQPPSPCNVRPCVKTVSLC*RVVHAR*LKCPHPKP 203
           +Q V S      P  P P PP+PC + PC +T     +VVH+  L    P P
Sbjct: 126 EQHVVSHVMHPAPPPPPPPPPAPC-MPPCHQT-----QVVHSVQLHASPPGP 171


>SB_7383| Best HMM Match : SapA (HMM E-Value=1.2e-13)
          Length = 492

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = -1

Query: 485 PQDFSTVHNNSLPLSKSVRNCVPRSPSGILRSSRRSPLSAIRVR 354
           P+  S V + +LP+   V  C+P SPS I RS    P     VR
Sbjct: 253 PRQISNVRSLTLPVRYQVIGCLP-SPSDIKRSVPYPPRQISNVR 295


>SB_43823| Best HMM Match : MAM (HMM E-Value=0)
          Length = 1724

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = -1

Query: 149  RNRFYAGPNIAW--GRWLRPRSLRSQSV 72
            R  F+  PN+A   G+WL P+SLR+  V
Sbjct: 947  REGFFNNPNLAGCKGQWLGPKSLRASRV 974


>SB_6893| Best HMM Match : PPV_E2_C (HMM E-Value=0.94)
          Length = 1058

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +3

Query: 27  TVVKFKTQQWVTSKTHTLRPETPGPQPPSPCNVRP 131
           +VV     + VT K  T +P TP P  P P   RP
Sbjct: 758 SVVAMPAARPVTPKPVTPKPVTPKPVTPKPVTTRP 792


>SB_6613| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 523

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
 Frame = +1

Query: 292 MDVPHVKREDYQLTDISDDGYLT----LMADNGDLREDLKIPDGDLGTQLRTDFDSGKEL 459
           +D+P+ K + + L  ++DD  L+    +  D   L E L  PD  +    R   D G E 
Sbjct: 37  LDIPYEKYDKFDLESLTDDECLSEFRFIKNDLYRLNEALNFPD-QITCPNRLTVD-GMEA 94

Query: 460 LCTVLKSCGEEC 495
           LC  L+     C
Sbjct: 95  LCMTLRRFAYPC 106


>SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1438

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 19/82 (23%), Positives = 33/82 (40%)
 Frame = +1

Query: 277 PSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDGDLGTQLRTDFDSGKE 456
           P +  + V   +  +++  D   +      ADN + RE+    + +L ++  T    G  
Sbjct: 284 PESDGIRVDETENGEHEAVDELPEDKPDTEADNYEQREETPTKEDELKSECTTSDSEGTP 343

Query: 457 LLCTVLKSCGEECVIAVKQTQL 522
              T  KS GEE V    +  L
Sbjct: 344 SAATYGKSDGEENVAQESEESL 365


>SB_30225| Best HMM Match : Peptidase_S8 (HMM E-Value=0.0034)
          Length = 605

 Score = 25.0 bits (52), Expect(2) = 8.2
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +3

Query: 66  KTHTLRPETPGPQPPSP 116
           K H  +P  P P PPSP
Sbjct: 344 KEHPDKPRDPAPVPPSP 360



 Score = 21.0 bits (42), Expect(2) = 8.2
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 90  TPGPQPPSPCNVRPCVKT 143
           T GP PP+  N +P   T
Sbjct: 377 TFGPPPPAASNAKPAQYT 394


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,552,578
Number of Sequences: 59808
Number of extensions: 456697
Number of successful extensions: 1318
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1310
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)