Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30606
(641 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g13950.1 68414.m01639 eukaryotic translation initiation facto... 105 2e-23
At1g26630.1 68414.m03243 eukaryotic translation initiation facto... 102 2e-22
At1g69410.1 68414.m07972 eukaryotic translation initiation facto... 101 3e-22
At1g56345.1 68414.m06477 pseudouridine synthase family protein l... 29 2.0
At5g14230.1 68418.m01663 ankyrin repeat family protein contains ... 29 2.6
At5g03140.1 68418.m00262 lectin protein kinase family protein co... 29 3.5
At3g46960.1 68416.m05099 DEAD/DEAH box helicase, putative simila... 29 3.5
At3g51290.1 68416.m05614 proline-rich family protein 28 4.6
At5g64890.1 68418.m08162 expressed protein 27 8.0
At5g13010.1 68418.m01491 RNA helicase, putative similar to DEAH-... 27 8.0
At2g28550.1 68415.m03468 AP2 domain-containing transcription fac... 27 8.0
At1g35830.1 68414.m04452 VQ motif-containing protein contains PF... 27 8.0
>At1g13950.1 68414.m01639 eukaryotic translation initiation factor
5A-1 / eIF-5A 1 identical to SP|Q9XI91 Eukaryotic
translation initiation factor 5A-1 (eIF-5A 1)
{Arabidopsis thaliana}
Length = 158
Score = 105 bits (252), Expect = 2e-23
Identities = 43/72 (59%), Positives = 56/72 (77%)
Frame = +2
Query: 65 EDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKXHLVGID 244
E+ HFE+ D+GAS T+P Q +RKNG++++K RPCK+VE+STSKTGKHGHAK H V ID
Sbjct: 4 EEHHFESSDAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAID 63
Query: 245 IFNVKSMKKSVP 280
IF K ++ VP
Sbjct: 64 IFTSKKLEDIVP 75
Score = 103 bits (248), Expect = 8e-23
Identities = 46/86 (53%), Positives = 66/86 (76%), Gaps = 1/86 (1%)
Frame = +1
Query: 256 KKYEEICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDGD-LGTQLR 432
KK E+I PS+HN DVPHV R DYQL DIS+DGY++L+ DNG ++DLK+P+ D L Q++
Sbjct: 68 KKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGYVSLLTDNGSTKDDLKLPNDDTLLQQIK 127
Query: 433 TDFDSGKELLCTVLKSCGEECVIAVK 510
+ FD GK+L+ +V+ + GEE + A+K
Sbjct: 128 SGFDDGKDLVVSVMSAMGEEQINALK 153
>At1g26630.1 68414.m03243 eukaryotic translation initiation factor
5A, putative / eIF-5A, putative strong similariy to
SP|Q9AXQ6 Eukaryotic translation initiation factor 5A-1
(eIF-5A 1) {Lycopersicon esculentum}
Length = 159
Score = 102 bits (244), Expect = 2e-22
Identities = 45/87 (51%), Positives = 65/87 (74%), Gaps = 1/87 (1%)
Frame = +1
Query: 256 KKYEEICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIP-DGDLGTQLR 432
KK E+I PS+HN DVPHV R DYQL DI++DG+++L+ D+G ++DLK+P D L Q+R
Sbjct: 68 KKLEDIVPSSHNCDVPHVNRVDYQLIDITEDGFVSLLTDSGGTKDDLKLPTDDGLTAQMR 127
Query: 433 TDFDSGKELLCTVLKSCGEECVIAVKQ 513
FD GK+++ +V+ S GEE + AVK+
Sbjct: 128 LGFDEGKDIVVSVMSSMGEEQICAVKE 154
Score = 97.5 bits (232), Expect = 7e-21
Identities = 40/72 (55%), Positives = 52/72 (72%)
Frame = +2
Query: 65 EDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKXHLVGID 244
++ HFE +SGAS T+P +RK G +++K RPCK+VE+STSKTGKHGHAK H V ID
Sbjct: 4 DEHHFEASESGASKTYPQSAGNIRKGGHIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAID 63
Query: 245 IFNVKSMKKSVP 280
IF K ++ VP
Sbjct: 64 IFTAKKLEDIVP 75
>At1g69410.1 68414.m07972 eukaryotic translation initiation factor
5A, putative / eIF-5A, putative strong similarity to
eukaryotic initiation factor 5A (2) (Nicotiana
plumbaginifolia) GI:19702, SP|Q9AXQ6| Eukaryotic
translation initiation factor 5A-1 (eIF-5A 1)
{Lycopersicon esculentum}
Length = 158
Score = 101 bits (243), Expect = 3e-22
Identities = 42/72 (58%), Positives = 55/72 (76%)
Frame = +2
Query: 65 EDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKXHLVGID 244
++ HFE+ D+GAS T+P Q +RK G +++KGRPCK+VE+STSKTGKHGHAK H V ID
Sbjct: 4 DEHHFESSDAGASKTYPQQAGNIRKGGHIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAID 63
Query: 245 IFNVKSMKKSVP 280
IF K ++ VP
Sbjct: 64 IFTSKKLEDIVP 75
Score = 101 bits (242), Expect = 4e-22
Identities = 45/87 (51%), Positives = 66/87 (75%), Gaps = 1/87 (1%)
Frame = +1
Query: 256 KKYEEICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIP-DGDLGTQLR 432
KK E+I PS+HN DVPHV R DYQL DIS+DG+++L+ DNG ++DLK+P D L TQL+
Sbjct: 68 KKLEDIVPSSHNCDVPHVNRVDYQLIDISEDGFVSLLTDNGSTKDDLKLPTDEALLTQLK 127
Query: 433 TDFDSGKELLCTVLKSCGEECVIAVKQ 513
F+ GK+++ +V+ + GEE + A+K+
Sbjct: 128 NGFEEGKDIVVSVMSAMGEEQMCALKE 154
>At1g56345.1 68414.m06477 pseudouridine synthase family protein low
similarity to SP|P23851 Ribosomal large subunit
pseudouridine synthase C (EC 4.2.1.70) (Pseudouridylate
synthase) (Uracil hydrolyase) {Escherichia coli};
contains Pfam profile PF00849: RNA pseudouridylate
synthase
Length = 322
Score = 29.5 bits (63), Expect = 2.0
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Frame = -3
Query: 474 QHGAQQFLAAVEVSTQLCAEVTIRDFEVLTQ-VTVVSHQGQVAIIRDISQLVVFALHVGY 298
+HGA + AA++V L +RD E + V+V S + + + D++ ++V G
Sbjct: 176 KHGAWRVYAALDVGRVLPGGSFVRDMETTFEVVSVNSVKNESCELEDVNHVIVAE---GE 232
Query: 297 VHVVCGGTD 271
+ CGG D
Sbjct: 233 RELSCGGDD 241
>At5g14230.1 68418.m01663 ankyrin repeat family protein contains
ankyrin repeats, Pfam:PF00023
Length = 591
Score = 29.1 bits (62), Expect = 2.6
Identities = 15/34 (44%), Positives = 16/34 (47%)
Frame = +1
Query: 394 LKIPDGDLGTQLRTDFDSGKELLCTVLKSCGEEC 495
L IPDGD T L G +C L SCG C
Sbjct: 412 LDIPDGDGYTPLMLAAREGHGHMCEYLISCGANC 445
>At5g03140.1 68418.m00262 lectin protein kinase family protein
contains Pfam domains, PF00138: Legume lectins alpha
domain, PF00139: Legume lectins beta domain and PF00069:
Protein kinase domain
Length = 711
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -3
Query: 165 RPFSITKPFLRRAEHCMGKVAEAPESPVSKCVSSMS 58
+P +T+P +R + A+ PE P++K SSMS
Sbjct: 631 QPDPVTRPTMRSVVQILVGEADVPEVPIAKPSSSMS 666
>At3g46960.1 68416.m05099 DEAD/DEAH box helicase, putative similar to
SP|P35207 Antiviral protein SKI2 {Saccharomyces
cerevisiae}; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 1347
Score = 28.7 bits (61), Expect = 3.5
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Frame = +1
Query: 253 CKKYEEICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNG--DLREDLKIPDGDLGTQ 426
C K EE + +D + +SD+ L + A G D+ +++ D DL Q
Sbjct: 1114 CVKLEEHMKLAREIKKHKTDLKDLEF-QMSDEALLQMPAFQGRIDVLKNIGCIDDDLVVQ 1172
Query: 427 LR----TDFDSGKELLCTV 471
++ + +SG+EL+CTV
Sbjct: 1173 IKGRVACEMNSGEELICTV 1191
>At3g51290.1 68416.m05614 proline-rich family protein
Length = 602
Score = 28.3 bits (60), Expect = 4.6
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +3
Query: 42 KTQQWVTSKTHTLRPETPGPQPPSP 116
+T W T+ T ++ P P P PP P
Sbjct: 91 ETTTWTTTTTSSVLPPPPPPPPPPP 115
>At5g64890.1 68418.m08162 expressed protein
Length = 109
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +1
Query: 247 LQCKKYEEICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADN 375
L C+ ++ PS + P + EDY + + DD + L+ DN
Sbjct: 34 LLCQPAKKTAPSPVTFNQPEEQEEDYGVA-LKDDDVVVLLRDN 75
>At5g13010.1 68418.m01491 RNA helicase, putative similar to DEAH-box
RNA helicase [Chlamydomonas reinhardtii] GI:12044832;
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain
Length = 1226
Score = 27.5 bits (58), Expect = 8.0
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +1
Query: 307 VKREDYQLTDISDDGYLTLMADNGDLREDLKIPDGDL-GTQLRTDFDSGKE 456
V+R+ +++ Y L ADN + + G + GT+++T+FDS +E
Sbjct: 350 VRRDGSKMSLAQSKKYSQLNADNAQWEDRQLLRSGAVRGTEVQTEFDSEEE 400
>At2g28550.1 68415.m03468 AP2 domain-containing transcription factor
RAP2.7 (RAP2.7) nearly identical to AP2 domain
transcription factor RAP2.7 (GI:2281639) [Arabidopsis
thaliana]
Length = 449
Score = 27.5 bits (58), Expect = 8.0
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +3
Query: 66 KTHTLRPETPGPQPP 110
+T +RP+ PGPQPP
Sbjct: 402 QTSAVRPQPPGPQPP 416
>At1g35830.1 68414.m04452 VQ motif-containing protein contains
PF05678: VQ motif
Length = 302
Score = 27.5 bits (58), Expect = 8.0
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +3
Query: 18 SFLTVVKFKTQQWVTSKTHTLRPETPGPQPPSP 116
++L V + ++TH L P+ P P PP P
Sbjct: 60 TYLNFVNNLISDDILNQTHLLPPQPPPPPPPPP 92
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,920,223
Number of Sequences: 28952
Number of extensions: 304237
Number of successful extensions: 908
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 898
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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