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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30605
         (683 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0043 + 5242496-5242554,5242673-5242778,5243586-5243723,524...   126   2e-29
02_02_0482 - 10819562-10819813,10820773-10820952,10822073-108221...   124   7e-29
12_02_0012 - 12309332-12310228,12311087-12311669,12311945-123120...   123   1e-28
11_01_0558 - 4396750-4396986,4397699-4398050,4398266-4398504,439...    29   3.4  
06_03_0290 - 19193707-19193752,19193822-19194090                       28   6.0  
03_05_0791 + 27736978-27737217,27737648-27739191,27739512-277397...    28   7.9  

>03_02_0043 +
           5242496-5242554,5242673-5242778,5243586-5243723,
           5243794-5243979,5244075-5244275,5244362-5244460
          Length = 262

 Score =  126 bits (303), Expect = 2e-29
 Identities = 57/92 (61%), Positives = 74/92 (80%)
 Frame = +3

Query: 240 KVFPQFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVF 419
           + + + RL AE VQG+NVL NF GM  TTDKLR +VKKWQTLIEA++DVKTTDGY+LR+F
Sbjct: 79  QAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDGYMLRLF 138

Query: 420 CIGFTNKDSLSQRKTCYAQHTQVRAIRKKIVK 515
           CIGFT +     ++TCYAQ +Q+R IR+K+V+
Sbjct: 139 CIGFTKRRPNQVKRTCYAQASQIRQIRRKMVE 170



 Score =   99 bits (238), Expect = 2e-21
 Identities = 48/65 (73%), Positives = 54/65 (83%), Gaps = 1/65 (1%)
 Frame = +1

Query: 61  VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTD-A 237
           VDPF +KDWYD+KAPS+F+ R +G TLV+RTQGTKIASEGLK RVFEVSLADLQ D D A
Sbjct: 21  VDPFAKKDWYDIKAPSVFNVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDEDQA 80

Query: 238 ERSFR 252
            R  R
Sbjct: 81  YRKIR 85



 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 26/61 (42%), Positives = 46/61 (75%)
 Frame = +2

Query: 497 QKENCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKKPRFE 676
           +++  EI+    ++ +L+E+V+K IP+ I K+IEKA   I+PL++V +RKVK+LK P+F+
Sbjct: 165 RRKMVEIMANQASSCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVFVRKVKILKAPKFD 224

Query: 677 I 679
           +
Sbjct: 225 L 225


>02_02_0482 -
           10819562-10819813,10820773-10820952,10822073-10822150,
           10823056-10823256,10823365-10823550,10823646-10823783,
           10824396-10824501,10824634-10824692
          Length = 399

 Score =  124 bits (299), Expect = 7e-29
 Identities = 57/92 (61%), Positives = 73/92 (79%)
 Frame = +3

Query: 240 KVFPQFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVF 419
           + + + RL AE VQGRNVL NF GM  TTDKLR +VKKWQTLIEA++DVKTTD Y+LR+F
Sbjct: 79  QAYRKVRLRAEDVQGRNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLF 138

Query: 420 CIGFTNKDSLSQRKTCYAQHTQVRAIRKKIVK 515
           CIGFT +     ++TCYAQ +Q+R IR+K+V+
Sbjct: 139 CIGFTKRRPNQVKRTCYAQASQIRQIRRKMVE 170



 Score =   99 bits (238), Expect = 2e-21
 Identities = 45/58 (77%), Positives = 52/58 (89%)
 Frame = +1

Query: 61  VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTD 234
           VDPF++KDWYD+KAP++FS R +G TLV+RTQGTKIASEGLK RVFEVSLADLQ D D
Sbjct: 21  VDPFSKKDWYDIKAPTVFSVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED 78



 Score = 62.5 bits (145), Expect = 3e-10
 Identities = 26/61 (42%), Positives = 45/61 (73%)
 Frame = +2

Query: 497 QKENCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKKPRFE 676
           +++  EI+    +  +L+E+V+K IP+ I K+IEK+   I+PL++V IRKVK+LK P+F+
Sbjct: 165 RRKMVEIMANQASTCDLKELVSKFIPEVIGKEIEKSTSSIFPLQNVFIRKVKILKAPKFD 224

Query: 677 I 679
           +
Sbjct: 225 L 225


>12_02_0012 -
           12309332-12310228,12311087-12311669,12311945-12312051,
           12313190-12313237,12315139-12315216,12315300-12315500,
           12315612-12315797,12315870-12316007,12318311-12318416,
           12318529-12318587
          Length = 800

 Score =  123 bits (297), Expect = 1e-28
 Identities = 56/92 (60%), Positives = 73/92 (79%)
 Frame = +3

Query: 240 KVFPQFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVF 419
           + + + RL AE VQG+NVL NF GM  TTDKLR +VKKWQTLIEA++DVKTTD Y+LR+F
Sbjct: 79  QAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLF 138

Query: 420 CIGFTNKDSLSQRKTCYAQHTQVRAIRKKIVK 515
           CIGFT +     ++TCYAQ +Q+R IR+K+V+
Sbjct: 139 CIGFTKRRPNQVKRTCYAQASQIRQIRRKMVE 170



 Score =  100 bits (239), Expect = 1e-21
 Identities = 49/65 (75%), Positives = 54/65 (83%), Gaps = 1/65 (1%)
 Frame = +1

Query: 61  VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTD-A 237
           VDPF +KDWYD+KAPS+F+ R VG TLV+RTQGTKIASEGLK RVFEVSLADLQ D D A
Sbjct: 21  VDPFAKKDWYDIKAPSVFNVRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDEDQA 80

Query: 238 ERSFR 252
            R  R
Sbjct: 81  YRKIR 85



 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 26/61 (42%), Positives = 46/61 (75%)
 Frame = +2

Query: 497 QKENCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKKPRFE 676
           +++  EI+    ++ +L+E+V+K IP+ I K+IEKA   I+PL++V +RKVK+LK P+F+
Sbjct: 165 RRKMVEIMVNQASSCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVFVRKVKILKAPKFD 224

Query: 677 I 679
           +
Sbjct: 225 L 225


>11_01_0558 -
           4396750-4396986,4397699-4398050,4398266-4398504,
           4398608-4398709
          Length = 309

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +2

Query: 551 EVVNKLIPDSIAKDIEKACHGIYPLRD 631
           ++VN  IPD + + ++K C  IY LR+
Sbjct: 34  QLVNTGIPDDLLERVKKVCSDIYKLRE 60


>06_03_0290 - 19193707-19193752,19193822-19194090
          Length = 104

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 295 SATSTAWTSQPISSGGWLKNGRLSSKPTLM 384
           +A S A T  P  S GW+  G  S+ P+L+
Sbjct: 67  AAGSAARTRSPSQSNGWITGGSASAMPSLV 96


>03_05_0791 +
           27736978-27737217,27737648-27739191,27739512-27739763,
           27739844-27739954,27740042-27740102,27740373-27740558
          Length = 797

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -3

Query: 204 NFENSSLQSFRSNFRSLGTVDKRGADLPLAE 112
           +FENS LQSF     +L +  K+G   P  E
Sbjct: 216 SFENSELQSFTDKIENLSSSQKKGYFKPKRE 246


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,202,166
Number of Sequences: 37544
Number of extensions: 418029
Number of successful extensions: 1205
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1205
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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