Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30605
         (683 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X98186-1|CAA66861.1|  269|Anopheles gambiae put. S3a ribosomal p...   143   5e-36
DQ370038-1|ABD18599.1|  122|Anopheles gambiae putative TIL domai...    24   5.1  
AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcript...    24   5.1  
AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcript...    23   6.8  
EF519382-1|ABP68491.1|  493|Anopheles gambiae LRIM1 protein.           23   9.0  

>X98186-1|CAA66861.1|  269|Anopheles gambiae put. S3a ribosomal
           protein homologue protein.
          Length = 269

 Score =  143 bits (346), Expect = 5e-36
 Identities = 64/88 (72%), Positives = 77/88 (87%)
 Frame = +3

Query: 246 FPQFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCI 425
           F +F+L+AE V GR+VL NFHGM LTTDKLR MV KWQTLIE ++DVKTTDG++LRVFCI
Sbjct: 84  FRKFKLVAESVNGRDVLTNFHGMALTTDKLRSMVNKWQTLIECSVDVKTTDGFMLRVFCI 143

Query: 426 GFTNKDSLSQRKTCYAQHTQVRAIRKKI 509
           GFT KDS+SQRKTCYAQH+Q++ IR K+
Sbjct: 144 GFTIKDSMSQRKTCYAQHSQIKNIRAKM 171



 Score =  119 bits (286), Expect = 1e-28
 Identities = 55/65 (84%), Positives = 59/65 (90%)
 Frame = +1

Query: 58  IVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDA 237
           +VDPFTRKDWYDVKAP+MF  RQ G TLVNRTQGTKIAS+GLKGRVFEVSLADLQ + DA
Sbjct: 21  VVDPFTRKDWYDVKAPNMFKNRQSGKTLVNRTQGTKIASDGLKGRVFEVSLADLQNEPDA 80

Query: 238 ERSFR 252
           ERSFR
Sbjct: 81  ERSFR 85



 Score = 86.6 bits (205), Expect = 6e-19
 Identities = 39/56 (69%), Positives = 49/56 (87%)
 Frame = +2

Query: 515 IITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKKPRFEIS 682
           II R++T+++L+ VV KL+PDSIAKDIEKAC  +YPL DV IRKVKVLKKPRF++S
Sbjct: 174 IIKREITSTDLKGVVEKLLPDSIAKDIEKACQVVYPLHDVYIRKVKVLKKPRFDLS 229


>DQ370038-1|ABD18599.1|  122|Anopheles gambiae putative TIL domain
           polypeptide protein.
          Length = 122

 Score = 23.8 bits (49), Expect = 5.1
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 289 LRPCTYSAINLNCGKTFPRQ 230
           +RP TY  IN  CG+ + R+
Sbjct: 77  VRPDTYFRINCICGEEYDRE 96


>AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1009

 Score = 23.8 bits (49), Expect = 5.1
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -2

Query: 646 LSDANIAQRVDAMAGLLDVLGNGVRNQLV 560
           L+ AN  QR++    L D++G+  RN+++
Sbjct: 560 LAIANALQRINTPKYLYDIIGDYFRNRVL 588


>AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1248

 Score = 23.4 bits (48), Expect = 6.8
 Identities = 12/39 (30%), Positives = 15/39 (38%)
 Frame = -1

Query: 671 NGASSTLSPFGCKHRAEGRCHGRPSRCPWQWSQESTCSP 555
           NG    +   G  H   G    RPSR    ++  S C P
Sbjct: 146 NGLGLEVLNIGTSHTFRGCGSARPSRIDVAFASPSICRP 184


>EF519382-1|ABP68491.1|  493|Anopheles gambiae LRIM1 protein.
          Length = 493

 Score = 23.0 bits (47), Expect = 9.0
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = +3

Query: 252 QFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQT 362
           Q+  I + +QG+ V      +DL+++KL +M  ++Q+
Sbjct: 199 QYNFIYD-IQGQVVFAKLKTLDLSSNKLAFMGPEFQS 234


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 731,839
Number of Sequences: 2352
Number of extensions: 15562
Number of successful extensions: 40
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 68995575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)