BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV30605 (683 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z32681-6|CAA83605.1| 257|Caenorhabditis elegans Hypothetical pr... 107 1e-23 AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 28 5.4 AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 28 5.4 AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 28 5.4 L25599-3|ABN43087.1| 570|Caenorhabditis elegans Hypothetical pr... 28 7.1 >Z32681-6|CAA83605.1| 257|Caenorhabditis elegans Hypothetical protein F56F3.5 protein. Length = 257 Score = 107 bits (256), Expect = 1e-23 Identities = 51/89 (57%), Positives = 64/89 (71%) Frame = +3 Query: 246 FPQFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCI 425 F +F+LIAE VQG+NVL NFH M +T DKL +VKKW TLIEAN VKTTDGY LRVF I Sbjct: 79 FRKFKLIAEDVQGKNVLTNFHAMSMTHDKLCSIVKKWHTLIEANTAVKTTDGYTLRVFVI 138 Query: 426 GFTNKDSLSQRKTCYAQHTQVRAIRKKIV 512 FT K +KT Y + +++R IR +++ Sbjct: 139 AFTKKSVNQVKKTSYTKTSKIRKIRSEMI 167 Score = 101 bits (242), Expect = 5e-22 Identities = 46/64 (71%), Positives = 53/64 (82%) Frame = +1 Query: 61 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAE 240 VDPF+RK+WYD+KAP+MF+ RQVG TL+NRTQGTKIASEGLKGRVFEVSL DL Sbjct: 20 VDPFSRKEWYDIKAPNMFNTRQVGKTLINRTQGTKIASEGLKGRVFEVSLGDLNNSEADF 79 Query: 241 RSFR 252 R F+ Sbjct: 80 RKFK 83 Score = 74.1 bits (174), Expect = 8e-14 Identities = 31/54 (57%), Positives = 45/54 (83%) Frame = +2 Query: 518 ITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKKPRFEI 679 I ++VT +L+EVV+KLIPDSI KDIEK C +YPL++V IRKVK++K+P+ ++ Sbjct: 170 IEKEVTGCDLKEVVSKLIPDSIGKDIEKTCSKLYPLQEVYIRKVKIIKRPKVDL 223 >AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein protein. Length = 10578 Score = 28.3 bits (60), Expect = 5.4 Identities = 14/43 (32%), Positives = 29/43 (67%), Gaps = 2/43 (4%) Frame = +2 Query: 446 LEPTQDVLRPAHSGQSNQKENCEII-TRDVT-NSELREVVNKL 568 +EPT + L PA S ++++ + EI+ +DVT E++E++ ++ Sbjct: 4835 VEPTVEKLAPAESKETSEVQPAEIVEQKDVTCEEEIKELLTEV 4877 Score = 27.5 bits (58), Expect = 9.4 Identities = 14/43 (32%), Positives = 28/43 (65%), Gaps = 2/43 (4%) Frame = +2 Query: 446 LEPTQDVLRPAHSGQSNQKENCEII-TRDVT-NSELREVVNKL 568 +EPT + L P S ++++ E EI+ +DVT E++E++ ++ Sbjct: 5352 VEPTVEKLAPVDSKETSEVEPAEIVEQKDVTCEEEIKELLTEV 5394 >AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein protein. Length = 18519 Score = 28.3 bits (60), Expect = 5.4 Identities = 14/43 (32%), Positives = 29/43 (67%), Gaps = 2/43 (4%) Frame = +2 Query: 446 LEPTQDVLRPAHSGQSNQKENCEII-TRDVT-NSELREVVNKL 568 +EPT + L PA S ++++ + EI+ +DVT E++E++ ++ Sbjct: 4835 VEPTVEKLAPAESKETSEVQPAEIVEQKDVTCEEEIKELLTEV 4877 Score = 27.5 bits (58), Expect = 9.4 Identities = 14/43 (32%), Positives = 28/43 (65%), Gaps = 2/43 (4%) Frame = +2 Query: 446 LEPTQDVLRPAHSGQSNQKENCEII-TRDVT-NSELREVVNKL 568 +EPT + L P S ++++ E EI+ +DVT E++E++ ++ Sbjct: 5352 VEPTVEKLAPVDSKETSEVEPAEIVEQKDVTCEEEIKELLTEV 5394 >AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein protein. Length = 18534 Score = 28.3 bits (60), Expect = 5.4 Identities = 14/43 (32%), Positives = 29/43 (67%), Gaps = 2/43 (4%) Frame = +2 Query: 446 LEPTQDVLRPAHSGQSNQKENCEII-TRDVT-NSELREVVNKL 568 +EPT + L PA S ++++ + EI+ +DVT E++E++ ++ Sbjct: 4835 VEPTVEKLAPAESKETSEVQPAEIVEQKDVTCEEEIKELLTEV 4877 Score = 27.5 bits (58), Expect = 9.4 Identities = 14/43 (32%), Positives = 28/43 (65%), Gaps = 2/43 (4%) Frame = +2 Query: 446 LEPTQDVLRPAHSGQSNQKENCEII-TRDVT-NSELREVVNKL 568 +EPT + L P S ++++ E EI+ +DVT E++E++ ++ Sbjct: 5352 VEPTVEKLAPVDSKETSEVEPAEIVEQKDVTCEEEIKELLTEV 5394 >L25599-3|ABN43087.1| 570|Caenorhabditis elegans Hypothetical protein F54H12.8 protein. Length = 570 Score = 27.9 bits (59), Expect = 7.1 Identities = 15/39 (38%), Positives = 19/39 (48%) Frame = -1 Query: 665 ASSTLSPFGCKHRAEGRCHGRPSRCPWQWSQESTCSPPP 549 ASST S + R +P+ PWQ Q S +PPP Sbjct: 104 ASSTTSDPSIPNPTRKRITRQPNYPPWQPHQPSNPNPPP 142 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,928,801 Number of Sequences: 27780 Number of extensions: 346646 Number of successful extensions: 1116 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 935 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1113 length of database: 12,740,198 effective HSP length: 79 effective length of database: 10,545,578 effective search space used: 1560745544 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -