Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30604
         (645 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    23   1.6  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   2.8  
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    21   6.6  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    21   6.6  

>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 16/51 (31%), Positives = 21/51 (41%)
 Frame = +3

Query: 354 QGVVSAGXDDGWRATRAAARQRNDKAASARAPALNAHRTAERRSGRYIGQR 506
           +G +  G D G          R+   ASA    L A   A   +GRY G+R
Sbjct: 248 RGWIERGADPGKLVLGLGVYGRSFTLASASNNKLGAPIVAGGDAGRYTGER 298


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +1

Query: 412  DNVTIKLRVHAHPHSTHIELQNVDQDDIS 498
            D+VT +L V+A PH+  I L +   + ++
Sbjct: 1385 DSVTHQLIVNAPPHAPQIALTSTTTNSLT 1413


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +1

Query: 217 VYRSSPSGDALHDPSHNNRYPPPANTFD 300
           V + + S   L  P HN  Y PP +  D
Sbjct: 8   VKQEADSTSPLLTPPHNPAYSPPPSYCD 35


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = -1

Query: 126 VCLVRLCTTNCGQRSRATEIIH 61
           VC+  +C +   + S++ E+IH
Sbjct: 923 VCICHVCYSTIQEVSKSGELIH 944


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,727
Number of Sequences: 336
Number of extensions: 3567
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16552695
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)