Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30604
(645 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 30 0.33
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos... 28 1.0
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c... 27 3.1
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar... 27 3.1
SPBC651.03c |gyp10||GTPase activating protein Gyp10|Schizosaccha... 26 4.0
SPAC2C4.04c |||conserved eukaryotic protein|Schizosaccharomyces ... 26 4.0
SPAP27G11.02 |||TPR repeat protein, unknown biological role|Schi... 26 4.0
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos... 25 7.1
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 25 7.1
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch... 25 9.3
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 25 9.3
SPBC30B4.08 |eri1||double-strand siRNA ribonuclease|Schizosaccha... 25 9.3
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 29.9 bits (64), Expect = 0.33
Identities = 22/74 (29%), Positives = 32/74 (43%)
Frame = -2
Query: 605 SRSKLCGTDNSPVSISDSCEYVCCERTEQTTTVSLADISS*STFCSSMCVECGCACTRSF 426
S S + +S SI S T ++T+S + SS S +S + + + SF
Sbjct: 258 SSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSSSSSSSPTSTSSTISSSSSSSSSF 317
Query: 425 IVTLSGSCTSCSPS 384
TLS S S S S
Sbjct: 318 SSTLSSSSMSSSSS 331
>SPCC1322.12c |bub1||serine/threonine protein kinase
Bub1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1044
Score = 28.3 bits (60), Expect = 1.0
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +1
Query: 172 VRSTGDVGMFGRGVVVYRSSPSGDALHDPSHNNRYPPPANTFDSKP 309
VR + F R ++ + PS +HD +++ +PPP SKP
Sbjct: 167 VRLLRNAAEFSRAYDLHNAHPS---IHDAPYSSPFPPPRIVLGSKP 209
>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 819
Score = 26.6 bits (56), Expect = 3.1
Identities = 22/56 (39%), Positives = 26/56 (46%)
Frame = -2
Query: 233 GDERYTTTPRPNIPTSPVLRTWRVPLATSWVAPQLKYASCGCARRTAGSGRVPPRS 66
G+ TTT +SP L VPLA S AP K + A T S +PPRS
Sbjct: 658 GNVGVTTTGSILTQSSPALPVQPVPLAYSKPAPTTKSSLTELAYNTNVS--LPPRS 711
>SPAC9G1.10c |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1191
Score = 26.6 bits (56), Expect = 3.1
Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +1
Query: 223 RSSPSGDAL-HDPSHNNRYPPPANTFDSK 306
+S+ D + HD ++N++ PPP F SK
Sbjct: 157 QSTKGNDLMKHDDTNNHQIPPPKPNFSSK 185
>SPBC651.03c |gyp10||GTPase activating protein
Gyp10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 373
Score = 26.2 bits (55), Expect = 4.0
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -1
Query: 408 QLHELLAIRHRXRLTPLLVAVIVHYSE 328
+L+ L +HR +LT LL V HY E
Sbjct: 87 KLNPFLLRKHRSQLTKLLSVVFKHYPE 113
>SPAC2C4.04c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 125
Score = 26.2 bits (55), Expect = 4.0
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Frame = +1
Query: 421 TIKLRVHAHPHSTHIELQNVDQDDISASD---TVVVCSVRSQHTYSHESL 561
T+K+ V A H T N+D DD +D T+ +C + ++ S+ L
Sbjct: 61 TLKIYVKAQQHKTQNLAINLDHDDWILNDGAKTLSLCGIENETELSYFEL 110
>SPAP27G11.02 |||TPR repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 356
Score = 26.2 bits (55), Expect = 4.0
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +3
Query: 324 YLHYSAR*RQQGVVSAGXDDGWRATRAAARQRNDKAASARAPALNAHR 467
YLH A RQ+G + D W+A ++A +Q + +P + R
Sbjct: 67 YLH-EALYRQKGENNHDFQDAWKAYQSAIKQAESEKMDMESPPVQGIR 113
>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 25.4 bits (53), Expect = 7.1
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = +1
Query: 250 HDPSHNNRYPPPANTFDSKPEIPFLTFTIVH 342
H HNN YPPP F S P P T + H
Sbjct: 181 HPHFHNNNYPPP-YCFQS-PVSPGATVPLQH 209
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2244
Score = 25.4 bits (53), Expect = 7.1
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -3
Query: 109 VHDELRAAVACHRDHPSVFVFYLRD 35
+H L+ AVA ++DHP V Y+ +
Sbjct: 1188 LHSYLQQAVAINKDHPVVISKYIEN 1212
>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1006
Score = 25.0 bits (52), Expect = 9.3
Identities = 12/59 (20%), Positives = 29/59 (49%)
Frame = +1
Query: 412 DNVTIKLRVHAHPHSTHIELQNVDQDDISASDTVVVCSVRSQHTYSHESLIDTGELSVP 588
DNV++ +A+ + NV+ ++ + T+ + H Y ++++ T + S+P
Sbjct: 135 DNVSVLDFSYANNFTVFASQSNVEAAHLALASTLAAKAAPVIHVYEPDAIVTTTDPSLP 193
>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 658
Score = 25.0 bits (52), Expect = 9.3
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = -2
Query: 227 ERYTTTPRPNIPTSPVLRTWRVPLATSWVAP 135
E TTTP T+P++ T P+ + P
Sbjct: 203 EETTTTPMEETTTTPMVETMITPMVEAMTTP 233
>SPBC30B4.08 |eri1||double-strand siRNA
ribonuclease|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 25.0 bits (52), Expect = 9.3
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +1
Query: 37 HANKTRRQMDDLGGTRPLPAVRRAQPHEAYFSCGATHDVA 156
H+N +D++ PL +V R QP ++C D+A
Sbjct: 169 HSNILVPSVDEIEIIEPLKSVPRTQPKNWAWACDGPWDMA 208
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,736,686
Number of Sequences: 5004
Number of extensions: 58531
Number of successful extensions: 203
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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