Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30604
(645 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0275 + 8478374-8478706 33 0.19
06_03_0335 + 19662933-19663334,19663358-19664023 30 1.4
11_06_0189 - 21039217-21039348,21039480-21039738,21039841-210400... 30 1.8
09_04_0021 - 13861369-13861538,13862274-13862432,13862493-138627... 30 1.8
11_06_0744 - 26850761-26850771,26850794-26850861,26851464-26851861 29 2.4
06_03_0509 + 21613541-21613837 29 2.4
06_02_0364 + 15178583-15178881,15179652-15179723,15179853-151799... 29 2.4
12_02_1209 - 27019724-27020040,27020690-27020945 29 4.2
11_06_0183 - 20999343-20999865,21000351-21000748 29 4.2
08_01_0114 - 900530-901191,901269-901338,901536-901640,901721-90... 29 4.2
06_03_0854 + 25400855-25403741,25406174-25407708 28 5.5
03_02_0915 + 12360079-12360095,12360225-12361353 28 5.5
11_04_0008 + 12115147-12115354,12115397-12116130 28 7.3
04_04_1358 + 32869222-32869306,32869947-32870008,32870301-328703... 28 7.3
01_01_0051 + 389051-389623 28 7.3
06_03_0325 + 19600379-19600454,19601686-19601873,19602113-19602226 27 9.7
03_05_0327 - 23154014-23154942,23155169-23155316,23155606-231566... 27 9.7
01_06_1509 - 37855894-37856679,37856766-37856952,37857508-378575... 27 9.7
01_06_0005 - 25514039-25514137,25514508-25514570,25514937-255150... 27 9.7
01_05_0560 - 23288078-23288370,23288448-23288733 27 9.7
01_01_0426 + 3234987-3235935,3236744-3236782,3237044-3237409,324... 27 9.7
>02_02_0275 + 8478374-8478706
Length = 110
Score = 33.1 bits (72), Expect = 0.19
Identities = 16/46 (34%), Positives = 20/46 (43%)
Frame = +2
Query: 68 ISVARDRCPQFVVHNRTRHTLAVAQPMMSPEEPSTSAVPVMSECSG 205
+SV+ DRCP H R +A A P P A P + SG
Sbjct: 27 VSVSGDRCPVLHHHRRLHDMVAAAVVSQPPPRPPPPAAPAAARTSG 72
>06_03_0335 + 19662933-19663334,19663358-19664023
Length = 355
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -1
Query: 219 HHHPAPEHSDITGTADVEGSSGD 151
HHH +H D+ A V GSSGD
Sbjct: 216 HHHRRTDHVDVVEVAVVTGSSGD 238
>11_06_0189 -
21039217-21039348,21039480-21039738,21039841-21040004,
21040371-21040533,21040615-21042137
Length = 746
Score = 29.9 bits (64), Expect = 1.8
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 11/78 (14%)
Frame = +1
Query: 367 QPAXMTDGEQLV----QLPDNVTIK--LRVHAH----PHSTHIELQNVDQDDISASDTVV 516
QP M + Q+ Q+P N ++ + V H PH + ++Q+ ++ ++
Sbjct: 196 QPFYMDEQSQMYAPYQQIPSNFLLQHDMDVQNHSSMQPHYVYPQMQHAAGSNVRSNQQAA 255
Query: 517 VC-SVRSQHTYSHESLID 567
C S R + TY H+ L+D
Sbjct: 256 ACTSARGRSTYGHQLLLD 273
>09_04_0021 -
13861369-13861538,13862274-13862432,13862493-13862720,
13864057-13864246
Length = 248
Score = 29.9 bits (64), Expect = 1.8
Identities = 18/48 (37%), Positives = 22/48 (45%)
Frame = +3
Query: 363 VSAGXDDGWRATRAAARQRNDKAASARAPALNAHRTAERRSGRYIGQR 506
V+A D GW AAA +R + +AR A A TA R QR
Sbjct: 4 VAAPEDSGWLVGGAAATRRRGRLCAARGEARVAELTATMAGRRKARQR 51
>11_06_0744 - 26850761-26850771,26850794-26850861,26851464-26851861
Length = 158
Score = 29.5 bits (63), Expect = 2.4
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +3
Query: 399 RAAARQRNDKAASAR-APALNAHRTAERRSGRYIGQRYRRRLFGAFATHIFARVTNR 566
RAA R++ ++ A R A R A RR R G+R RRR G F + +V R
Sbjct: 89 RAAGRRKEEEEAGRRKAGEETRRRGAGRRKRRRGGRRRRRRRRGRFLYSPYWKVDTR 145
>06_03_0509 + 21613541-21613837
Length = 98
Score = 29.5 bits (63), Expect = 2.4
Identities = 18/43 (41%), Positives = 25/43 (58%)
Frame = +3
Query: 390 RATRAAARQRNDKAASARAPALNAHRTAERRSGRYIGQRYRRR 518
R+ R+AA ++AASAR + +RRSG G+R RRR
Sbjct: 51 RSRRSAAAAAKEEAASARWRKRSGAVGRKRRSGVVGGKRKRRR 93
>06_02_0364 +
15178583-15178881,15179652-15179723,15179853-15179917,
15180890-15180934,15182493-15183170,15183376-15183410,
15183647-15183736,15183896-15183985,15184164-15184262,
15184938-15185013,15185473-15185588
Length = 554
Score = 29.5 bits (63), Expect = 2.4
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -2
Query: 221 YTTTPRPNIPTSPVLRTWRVPLATSWVAPQLKYASCGCARRTAGSGR 81
+ +TPRP P P R R PLA+ + + C CA ++ SGR
Sbjct: 7 FLSTPRPPPPLVPAHR--RRPLASRSGLRRREGCPCSCASSSSSSGR 51
>12_02_1209 - 27019724-27020040,27020690-27020945
Length = 190
Score = 28.7 bits (61), Expect = 4.2
Identities = 17/33 (51%), Positives = 22/33 (66%)
Frame = +3
Query: 393 ATRAAARQRNDKAASARAPALNAHRTAERRSGR 491
A AAA +R+D+ AS+RA +L A R A RS R
Sbjct: 19 AAAAAAARRDDEGASSRAASLAASRVA--RSAR 49
>11_06_0183 - 20999343-20999865,21000351-21000748
Length = 306
Score = 28.7 bits (61), Expect = 4.2
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Frame = +1
Query: 271 RYPPPANTFDSKPEIPFLTFTIVHDDGNKEWCQPAXMTDGEQLVQLPDNVTIKLRVHAH- 447
R PPP D+KP P ++ + + G + M DG ++V L D+ + +H
Sbjct: 153 RPPPPPADDDAKPAEPRVSLSALSVVGGDNTMRLPVMIDGLRVVSLIDSGSTHNFIHTEL 212
Query: 448 PHSTHIELQNV 480
H + L+ V
Sbjct: 213 AHHLRLRLEPV 223
>08_01_0114 - 900530-901191,901269-901338,901536-901640,901721-901831,
901912-902016,902245-902391,903273-903354,903445-903786,
903873-904177,904259-904435,904799-904852,905171-905254,
905855-905968,906048-906321,907552-907926,908003-908267,
908352-908538,908615-909052,909895-909966,910037-910630,
911471-911623,911700-911828,912326-912657,912705-912840,
913046-913491,913580-915087,915169-915431,915622-915738,
915844-916014,916743-916845,916930-916988,918360-918461,
918560-918649,918727-918877,919745-919830,919926-920102,
920915-920978,921859-922008,923132-923211,923311-923376,
924540-924747,925502-925575,925761-925848,926140-926312,
926541-926609,926698-926741,927074-927167,927290-927366,
927475-927552,927992-928085
Length = 3314
Score = 28.7 bits (61), Expect = 4.2
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +1
Query: 475 NVDQDDISASDTVVVCSVRSQHTYSHESLIDTGELSVPQSLDRL 606
N Q+ ++AS TV+ S+ S + HES LSVP+S+ L
Sbjct: 1099 NSSQNSMNASLTVLDLSLVSVRVHFHESCGILATLSVPESIAAL 1142
>06_03_0854 + 25400855-25403741,25406174-25407708
Length = 1473
Score = 28.3 bits (60), Expect = 5.5
Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Frame = -2
Query: 269 LLCEGSCSASPLGDE-RYTTTPRPNIPTSPVLRTWRVPLATSWVAPQLKYASCGCARRTA 93
L G+ + P+ + T +P PVL V +AT + Y + CA TA
Sbjct: 1412 LAASGAAAPPPVPAKLELATAAATTLPEKPVLTAHEVVMATLFPNGVFSYIAIACATATA 1471
Query: 92 G 90
G
Sbjct: 1472 G 1472
>03_02_0915 + 12360079-12360095,12360225-12361353
Length = 381
Score = 28.3 bits (60), Expect = 5.5
Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 1/103 (0%)
Frame = -2
Query: 356 LLPSSCTIVKVRNGISGLESKVLAG-GG*RLLCEGSCSASPLGDERYTTTPRPNIPTSPV 180
L+PS CT+V VR ++G ++ + + + +G +S D T+T
Sbjct: 26 LIPSGCTVV-VRRRVAGPPAETIVELTTKKPMSQGGGGSS--SDSGATSTGAEVDDEEKA 82
Query: 179 LRTWRVPLATSWVAPQLKYASCGCARRTAGSGRVPPRSSICLR 51
+ W AP + C R A +GR PP +C R
Sbjct: 83 ISAVIDAAQLKWEAPTSQGGHC-YGHRGAHAGRAPPAGYVCHR 124
>11_04_0008 + 12115147-12115354,12115397-12116130
Length = 313
Score = 27.9 bits (59), Expect = 7.3
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = -3
Query: 181 YCGRGGFLWRHHGLRHS*SMPRAVVHDELRAAVACHR 71
Y GRGG +WR H L A+V +LR AC R
Sbjct: 40 YLGRGGPMWRGHELPR--RSATAMVAADLRRRGACWR 74
>04_04_1358 + 32869222-32869306,32869947-32870008,32870301-32870393,
32870640-32870761,32873139-32873167,32873586-32873891,
32873977-32874035,32874148-32874279,32874414-32874455,
32874560-32875093,32875189-32875379,32875538-32876027,
32876273-32876335,32876704-32876805,32876895-32877215,
32877294-32877386,32877484-32877585,32877718-32877822,
32877933-32878066,32878429-32878612,32879226-32879357,
32879447-32879559,32879628-32879709,32880328-32881992
Length = 1746
Score = 27.9 bits (59), Expect = 7.3
Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Frame = +3
Query: 378 DDGWRATRAAARQRN-DKAASARAPALNAHRTAERRSGRYIGQRYR 512
D+GW+A R N K +S R PAL GR G YR
Sbjct: 1260 DEGWQAANLRGRSANVRKKSSRRRPALTKLMVDRLEDGR-TGSAYR 1304
>01_01_0051 + 389051-389623
Length = 190
Score = 27.9 bits (59), Expect = 7.3
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +2
Query: 152 SPEEPSTSAVPVMSECSGAGWW 217
SP PS+S+ S SG+ WW
Sbjct: 161 SPSPPSSSSTSSSSSSSGSSWW 182
>06_03_0325 + 19600379-19600454,19601686-19601873,19602113-19602226
Length = 125
Score = 27.5 bits (58), Expect = 9.7
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = -2
Query: 317 GISGLESKVLAGGG*RLLCEG-SCSASPLGD--ERYTTTPRPNIPTSPVLRTW 168
G++ + GGG + G SCS++ D ++T+ R +PT P+ R W
Sbjct: 17 GVTTIAGSDACGGGKNTISVGFSCSSTYSADLYMPFSTSVRLALPTGPLQRMW 69
>03_05_0327 -
23154014-23154942,23155169-23155316,23155606-23156622,
23156753-23157217,23160258-23161247
Length = 1182
Score = 27.5 bits (58), Expect = 9.7
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +1
Query: 454 STHIELQNVDQDDISASDTVVV 519
+TH LQ++DQ DIS S++ +
Sbjct: 807 ATHSALQDIDQTDISTSESTTI 828
>01_06_1509 -
37855894-37856679,37856766-37856952,37857508-37857580,
37857772-37857816,37858004-37858010
Length = 365
Score = 27.5 bits (58), Expect = 9.7
Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -2
Query: 617 T*PPSRSKLC-GTDNSPVSISDSCEYVCCERTEQ 519
T P + +C G+ + P+++ D C C RTE+
Sbjct: 59 TTPRTEQHVCNGSSSQPINVGDDCNVGDCVRTEK 92
>01_06_0005 -
25514039-25514137,25514508-25514570,25514937-25515047,
25515843-25516103,25516293-25516338,25516504-25516904
Length = 326
Score = 27.5 bits (58), Expect = 9.7
Identities = 15/33 (45%), Positives = 16/33 (48%)
Frame = -3
Query: 232 GMSDTPPPRARTFRHHRYCGRGGFLWRHHGLRH 134
G+ PPR R R HR GRG GLRH
Sbjct: 22 GLGRASPPRLRFRRRHRAAGRG------RGLRH 48
>01_05_0560 - 23288078-23288370,23288448-23288733
Length = 192
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = +1
Query: 226 SSPSGDALHDPSHNNRYPPPANTFDSKPEIPF 321
SSP D HDP H + P + D P+ F
Sbjct: 132 SSPPDDVDHDPDHRYVFSSPHDDVDHDPDQVF 163
>01_01_0426 +
3234987-3235935,3236744-3236782,3237044-3237409,
3240871-3242315
Length = 932
Score = 27.5 bits (58), Expect = 9.7
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +1
Query: 208 GVVVYRSSPSGDALHDPSHN-NRYPPPANTFDSKPEIPFLTFTI 336
G V+ S+PS + H H R PP + +IP L FT+
Sbjct: 418 GAVIAGSTPSAGSRHHRDHAIRREPPSPGAATMQGKIPQLLFTL 461
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,124,364
Number of Sequences: 37544
Number of extensions: 490935
Number of successful extensions: 1877
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1876
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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