Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30604
(645 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_1718| Best HMM Match : I-set (HMM E-Value=3.8e-07) 31 0.61
SB_55406| Best HMM Match : DUF1534 (HMM E-Value=0.45) 31 1.1
SB_26663| Best HMM Match : Telo_bind (HMM E-Value=1.8e-17) 31 1.1
SB_1015| Best HMM Match : Extensin_2 (HMM E-Value=0.11) 29 2.4
SB_40778| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_25222| Best HMM Match : Flagellin_C (HMM E-Value=0.72) 29 4.3
SB_40041| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_36995| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_32009| Best HMM Match : PKD (HMM E-Value=1.9e-19) 28 5.7
SB_21505| Best HMM Match : Topoisom_I (HMM E-Value=9.90001e-40) 28 5.7
SB_1631| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_50960| Best HMM Match : Pkinase (HMM E-Value=0) 28 5.7
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061) 28 7.5
SB_6619| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_20217| Best HMM Match : Amidase (HMM E-Value=2.3e-21) 27 9.9
SB_41344| Best HMM Match : Peptidase_S9 (HMM E-Value=5.6e-12) 27 9.9
SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15) 27 9.9
>SB_1718| Best HMM Match : I-set (HMM E-Value=3.8e-07)
Length = 1017
Score = 31.5 bits (68), Expect = 0.61
Identities = 27/96 (28%), Positives = 39/96 (40%), Gaps = 1/96 (1%)
Frame = +1
Query: 16 RVGPDSDHANKTRRQMDDLGGTRPLPAVRRAQPHEA-YFSCGATHDVARGTLHVRSTGDV 192
R P+ NKT G + ++ + Q H+A + C AT+DV RGT+ T +V
Sbjct: 385 RPSPNVTWVNKTSGSPVAHGTGSAILSLLKIQRHQAGVYQCRATNDVGRGTITQDVTINV 444
Query: 193 GMFGRGVVVYRSSPSGDALHDPSHNNRYPPPANTFD 300
V R+ G H + RY P D
Sbjct: 445 QYSSDEEYVLRTEAVGAVKH--TERKRYFVPLRFMD 478
>SB_55406| Best HMM Match : DUF1534 (HMM E-Value=0.45)
Length = 248
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +1
Query: 157 RGTLHVRSTGDVGMFGRGVVVYRSSP-SGDALHDPSHNNRYPPPANTFDSKPEIP 318
RG H R G FG RSS G + HDP H+N PP ++ ++ E P
Sbjct: 145 RGMAHGRRRGRGFGFGNASRHERSSALPGYSTHDPRHSNDRPPRGDSIVTQLEGP 199
>SB_26663| Best HMM Match : Telo_bind (HMM E-Value=1.8e-17)
Length = 1086
Score = 30.7 bits (66), Expect = 1.1
Identities = 22/77 (28%), Positives = 33/77 (42%)
Frame = -2
Query: 248 SASPLGDERYTTTPRPNIPTSPVLRTWRVPLATSWVAPQLKYASCGCARRTAGSGRVPPR 69
S+S +E +TT RP P + PL AP + +CG A T + +
Sbjct: 693 SSSSANEEPLSTTSRPQPAQQPAQSSGATPLEAQAEAPTVSTTTCGAA-ATKTTSAISQG 751
Query: 68 SSICLRVLFA*SLSGPT 18
+S L+ S+S PT
Sbjct: 752 ASTSLQAT-THSVSSPT 767
>SB_1015| Best HMM Match : Extensin_2 (HMM E-Value=0.11)
Length = 828
Score = 29.5 bits (63), Expect = 2.4
Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 8/96 (8%)
Frame = +1
Query: 211 VVVYRSSPSGDALHDPSHNNRYPPPA-NTFDSKPEIPFLTFTIVHDDGNKEWCQPAXMTD 387
+++ R SPS + + +P + P PA T D + + I D +E Q +D
Sbjct: 393 ILITRKSPSPEPVEEPEAISNTPEPALETTDPEAKETNKPDVITEHDNVQEHEQKGETSD 452
Query: 388 GEQLVQLP-------DNVTIKLRVHAHPHSTHIELQ 474
G+ ++P ++ ++R PH T + LQ
Sbjct: 453 GDTKQEVPFIKEEQIEDKGPEVRNDMEPHETDVPLQ 488
>SB_40778| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 231
Score = 28.7 bits (61), Expect = 4.3
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = +1
Query: 436 VHAHPHSTHIELQNVDQDDISASDTVVVCSVRSQHTYSHES--LIDTGELSVP 588
VH PH + E Q+ ++D++ D C+ +++T ES ++D ELS P
Sbjct: 137 VHITPHESSGESQHSSKEDLTLGD----CTEDNENTPPDESVNILDVRELSTP 185
>SB_25222| Best HMM Match : Flagellin_C (HMM E-Value=0.72)
Length = 418
Score = 28.7 bits (61), Expect = 4.3
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -2
Query: 461 CVECGCACTRSFIVTLSGSCTSC 393
C +CGCA +V L G+CT C
Sbjct: 318 CTDCGCAA----LVLLDGTCTDC 336
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -2
Query: 461 CVECGCACTRSFIVTLSGSCTSC 393
C +CGCA +V L G+CT C
Sbjct: 348 CTDCGCAS----LVLLDGTCTDC 366
>SB_40041| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 151
Score = 28.7 bits (61), Expect = 4.3
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
Frame = -2
Query: 599 SKLCGTDNSPVSI---SDSCEYVCCERTEQTTTVSLADISS*STFCSSMCVECGCACTRS 429
S+LC D P+S+ S+S +C RT +T + L D S C
Sbjct: 36 SQLCDRDGPPISVLRSSESDSDICLLRTGVSTVIDL-DHRQLQLLQSPTMTLCISLLDDV 94
Query: 428 FIVT-LSGSCTS 396
FI T + GSC+S
Sbjct: 95 FITTPMMGSCSS 106
>SB_36995| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 574
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/32 (40%), Positives = 22/32 (68%)
Frame = -1
Query: 504 AGRYIVLIDVLQFDVR*VRVRVHSQLYRYVVG 409
A R I++++VL V+ ++ RVHS + R+V G
Sbjct: 515 AARCILVVEVLVPQVKLIKYRVHSMIGRFVDG 546
>SB_32009| Best HMM Match : PKD (HMM E-Value=1.9e-19)
Length = 3083
Score = 28.3 bits (60), Expect = 5.7
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +2
Query: 476 TSIRTIYRPAIPSSFVRCVRNTHIR 550
TS+ +Y ++P ++RCV N +R
Sbjct: 1500 TSVMQLYNSSMPILYIRCVHNCQVR 1524
>SB_21505| Best HMM Match : Topoisom_I (HMM E-Value=9.90001e-40)
Length = 372
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 454 STHIELQNVDQDDISASDTVVVCSVRSQHTYSHESLID 567
ST + L+ + D +DTV CS+R +H HE D
Sbjct: 18 STKLALRAGHEKDDDTADTVGCCSLRVEHIKLHEEWED 55
>SB_1631| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 884
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +1
Query: 169 HVRSTGDVGMFGRGVVVYRSSPSG 240
H+RSTG++ RG VYRS+P G
Sbjct: 433 HIRSTGNLA---RGTHVYRSNPGG 453
>SB_50960| Best HMM Match : Pkinase (HMM E-Value=0)
Length = 632
Score = 28.3 bits (60), Expect = 5.7
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -3
Query: 214 PPRARTFRHHRYCGRGGF 161
P +TFRH+R G+GGF
Sbjct: 79 PVTKKTFRHYRVLGKGGF 96
>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2870
Score = 27.9 bits (59), Expect = 7.5
Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Frame = -2
Query: 590 CGTDNSPVSISDSCEYVCCERTEQTTTVSLADISS*STFCSSMCVE-CGCACTRSFIVTL 414
C + PV SC+ C R T + +AD S C ++C E C C S +
Sbjct: 1190 CCQNGCPVECLSSCKPHCPPRCCFTVLIPIADNQSVKEKCPAVCKETCKPECPLSCCLKD 1249
Query: 413 SGSC 402
+ C
Sbjct: 1250 ARGC 1253
>SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061)
Length = 2735
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = -1
Query: 234 WG*AIHHHPAPEHSDITGTADVEGSSGDIMGCATAKV 124
WG +HP G + VEGSSG ++ + K+
Sbjct: 972 WGYGYGYHPGHSFGHSFGKSKVEGSSGKVLKKESKKI 1008
>SB_6619| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 942
Score = 27.9 bits (59), Expect = 7.5
Identities = 17/38 (44%), Positives = 25/38 (65%)
Frame = +3
Query: 405 AARQRNDKAASARAPALNAHRTAERRSGRYIGQRYRRR 518
++R+RN K S ++P+L R+ RRS R I +R RRR
Sbjct: 310 SSRERNTKRKS-KSPSLERRRSRARRS-RSIERRDRRR 345
>SB_20217| Best HMM Match : Amidase (HMM E-Value=2.3e-21)
Length = 457
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -3
Query: 577 IRRCRLVTRANMCVANAPNKRRRYRWPIYRPDRRSAV 467
+R R+V + N+CVA P + P Y PD + V
Sbjct: 94 LRGKRIVIKDNICVAGIPMSMGSHSLPGYVPDEDATV 130
>SB_41344| Best HMM Match : Peptidase_S9 (HMM E-Value=5.6e-12)
Length = 196
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/45 (26%), Positives = 21/45 (46%)
Frame = +1
Query: 406 LPDNVTIKLRVHAHPHSTHIELQNVDQDDISASDTVVVCSVRSQH 540
+P KLR+ AH T D + SD +++CS+ ++
Sbjct: 127 VPLKYVAKLRLQAHDQRTQNAGSQTGADTTAGSDPMILCSIDQEN 171
>SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15)
Length = 544
Score = 27.5 bits (58), Expect = 9.9
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = -2
Query: 272 RLLCEGSCSASPLGDERYTTTPRPNIPTSPVLR-TWRVPLATSWVAPQLKYAS 117
R LC CS++ TT + + TSP++ ++R PLA VA L YA+
Sbjct: 156 RTLCILYCSSNSSRARTLRTTSK-HFSTSPIMAVSYRFPLAMVTVAAFLAYAA 207
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,434,570
Number of Sequences: 59808
Number of extensions: 544844
Number of successful extensions: 1963
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1960
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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