Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30604
         (645 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.47 
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           23   3.3  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           23   3.3  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   5.8  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   5.8  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.4 bits (53), Expect = 0.47
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +1

Query: 412  DNVTIKLRVHAHPHSTHIEL 471
            D VT +L VHA PHS  I L
Sbjct: 1355 DTVTHQLIVHAPPHSPQITL 1374


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -2

Query: 557 DSCEYVCCERTEQTTTVSLAD 495
           D C+ +CC R  +T  V++ +
Sbjct: 111 DGCDLMCCGRGYKTQEVTVVE 131


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -2

Query: 557 DSCEYVCCERTEQTTTVSLAD 495
           D C+ +CC R  +T  V++ +
Sbjct: 112 DGCDLMCCGRGYKTQEVTVVE 132


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 8/19 (42%), Positives = 9/19 (47%)
 Frame = -3

Query: 190 HHRYCGRGGFLWRHHGLRH 134
           HH   G  GFL   H  R+
Sbjct: 286 HHAILGHSGFLCERHQKRY 304


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = +1

Query: 232 PSGDALHDPSHNNRYPPPANTFDSKPEIPFLTFTIVHDDGN 354
           P+ + +H P H   YP P  +      + ++ FT +   GN
Sbjct: 26  PAEELIHIPEHWLVYPEPNPSLHYLLALLYILFTFLALLGN 66


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,150
Number of Sequences: 438
Number of extensions: 4676
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)