Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30604
         (645 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g79620.1 68414.m09283 leucine-rich repeat transmembrane prote...    32   0.37 
At5g43270.3 68418.m05289 squamosa promoter-binding protein-like ...    31   0.50 
At5g43270.2 68418.m05288 squamosa promoter-binding protein-like ...    31   0.50 
At5g43270.1 68418.m05287 squamosa promoter-binding protein-like ...    31   0.50 
At2g33490.1 68415.m04105 hydroxyproline-rich glycoprotein family...    29   2.0  
At1g06710.1 68414.m00713 pentatricopeptide (PPR) repeat-containi...    29   2.0  
At4g19170.1 68417.m02829 9-cis-epoxycarotenoid dioxygenase, puta...    28   4.6  
At5g54920.1 68418.m06840 expressed protein                             27   8.1  
At5g42220.1 68418.m05139 ubiquitin family protein contains INTER...    27   8.1  
At5g02340.1 68418.m00157 DC1 domain-containing protein contains ...    27   8.1  
At4g31160.1 68417.m04423 transducin family protein / WD-40 repea...    27   8.1  
At3g25710.1 68416.m03199 basic helix-loop-helix (bHLH) family pr...    27   8.1  
At2g19630.1 68415.m02293 F-box family protein contains F-box dom...    27   8.1  

>At1g79620.1 68414.m09283 leucine-rich repeat transmembrane protein
           kinase, putative similar to receptor protein kinase
           GI:1389566 from [Arabidopsis thaliana]
          Length = 971

 Score = 31.9 bits (69), Expect = 0.37
 Identities = 18/48 (37%), Positives = 25/48 (52%)
 Frame = -1

Query: 159 SGDIMGCATAKVCLVRLCTTNCGQRSRATEIIHLSSCFICVITIGTDS 16
           +G I GC+   +CLV L      Q+ RA + I LS  F+   + G DS
Sbjct: 567 TGIITGCSALVLCLVALGIYAMWQKRRAEQAIGLSRPFVSWASSGKDS 614


>At5g43270.3 68418.m05289 squamosa promoter-binding protein-like 2
           (SPL2) identical to squamosa promoter binding
           protein-like 2 [Arabidopsis thaliana] GI:5931645;
           contains Pfam profile PF03110: SBP domain
          Length = 419

 Score = 31.5 bits (68), Expect = 0.50
 Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +1

Query: 247 LHDPSHNNRYPPPANTFDSKPEIPFL--TFTIVHDDGNKEWCQPA 375
           L D +   R P P  T+D KP++ F+   F ++H    +++  P+
Sbjct: 233 LSDHNARRRKPNPGRTYDGKPQVDFVWNRFALIHPRSEEKFIWPS 277


>At5g43270.2 68418.m05288 squamosa promoter-binding protein-like 2
           (SPL2) identical to squamosa promoter binding
           protein-like 2 [Arabidopsis thaliana] GI:5931645;
           contains Pfam profile PF03110: SBP domain
          Length = 419

 Score = 31.5 bits (68), Expect = 0.50
 Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +1

Query: 247 LHDPSHNNRYPPPANTFDSKPEIPFL--TFTIVHDDGNKEWCQPA 375
           L D +   R P P  T+D KP++ F+   F ++H    +++  P+
Sbjct: 233 LSDHNARRRKPNPGRTYDGKPQVDFVWNRFALIHPRSEEKFIWPS 277


>At5g43270.1 68418.m05287 squamosa promoter-binding protein-like 2
           (SPL2) identical to squamosa promoter binding
           protein-like 2 [Arabidopsis thaliana] GI:5931645;
           contains Pfam profile PF03110: SBP domain
          Length = 419

 Score = 31.5 bits (68), Expect = 0.50
 Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +1

Query: 247 LHDPSHNNRYPPPANTFDSKPEIPFL--TFTIVHDDGNKEWCQPA 375
           L D +   R P P  T+D KP++ F+   F ++H    +++  P+
Sbjct: 233 LSDHNARRRKPNPGRTYDGKPQVDFVWNRFALIHPRSEEKFIWPS 277


>At2g33490.1 68415.m04105 hydroxyproline-rich glycoprotein family
           protein Common family member:At3g26910 [Arabidopsis
           thaliana]
          Length = 623

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 16/63 (25%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
 Frame = -1

Query: 543 CVLRTHRTNDDGIAGRYIVLIDVLQFDVR*VRVRVHSQLYRYVV----GQLHELLAIRHR 376
           C+L     NDD  +GR ++++  LQF+++ +  +  S +++ +       L+EL  +   
Sbjct: 73  CLLEKTALNDDEESGRVLIMLGKLQFELQKLVDKYRSHIFQTITIPSESLLNELRIVEEM 132

Query: 375 XRL 367
            RL
Sbjct: 133 QRL 135


>At1g06710.1 68414.m00713 pentatricopeptide (PPR) repeat-containing
           protein low similarity to fertility restorer [Petunia x
           hybrida] GI:22128587; contains Pfam profile PF01535: PPR
           repeat
          Length = 946

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +1

Query: 487 DDISASDTVVVCSVRSQHTYSHESLIDTGELSVPQ 591
           D  S SD+  V  +  ++++ H+SL+D G ++V Q
Sbjct: 14  DPFSPSDSREVVDLTKEYSFLHDSLVDYGNVNVHQ 48


>At4g19170.1 68417.m02829 9-cis-epoxycarotenoid dioxygenase,
           putative / neoxanthin cleavage enzyme, putative /
           carotenoid cleavage dioxygenase, putative similar to
           9-cis-epoxycarotenoid dioxygenase [Phaseolus
           vulgaris][GI:6715257]; neoxanthin cleavage enzyme,
           Lycopersicon esculentum, PATX:E325797
          Length = 595

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 104 VHNRTRHTLAVAQPMMSPEEPSTSAV 181
           +HNRT HTL  + P + PE    +A+
Sbjct: 60  LHNRTNHTLVSSPPKLRPEMTLATAL 85


>At5g54920.1 68418.m06840 expressed protein
          Length = 517

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
 Frame = +1

Query: 91  PAVRRAQPHEAYFSCGATHDVARGTLHVRSTGDVGMFGR-GVVVYRSSPSGDALHDPSHN 267
           P + R QPH   F+    H V    + V     V M GR G ++Y    S D +    HN
Sbjct: 383 PTINRGQPHR--FTT-QYHSVQPTPMLVNPNPQV-MVGRSGQLMYMQPISQDLVQGAPHN 438

Query: 268 NRYPP 282
           +  PP
Sbjct: 439 SHLPP 443


>At5g42220.1 68418.m05139 ubiquitin family protein contains
           INTERPRO:IPR000626 ubiquitin domain
          Length = 879

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 16/61 (26%), Positives = 27/61 (44%)
 Frame = +1

Query: 229 SPSGDALHDPSHNNRYPPPANTFDSKPEIPFLTFTIVHDDGNKEWCQPAXMTDGEQLVQL 408
           S +G     PS+ +   PP NT D +P I   +    H    + +   +  T   ++VQ+
Sbjct: 174 STNGTQSSMPSNQSSNAPPGNTSDGEPGIGGQSQATGHSQPRQAFPGVSFQTSMPRVVQI 233

Query: 409 P 411
           P
Sbjct: 234 P 234


>At5g02340.1 68418.m00157 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 631

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 540 HIFARVTNRHRRIVCTTEFRSTGWSCEITPSE 635
           HI  +++  H RI+ T+   S  WSC +   E
Sbjct: 252 HII-KISRHHHRIIFTSSLPSAKWSCGVCRGE 282


>At4g31160.1 68417.m04423 transducin family protein / WD-40 repeat
           family protein contains 2 WD-40 repeats (PF00400);
           KIAA0800 protein, Homo sapiens GI:3882321 EMBL:AB018343
          Length = 1846

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = -2

Query: 605 SRSKLCGTDNSPVSISDSCEYVCCERTEQTTTVSLADISS*STFCSSMCVEC 450
           +R+ +   D + VS + +C  V  ++T   + VSL DI S +      C++C
Sbjct: 465 TRAAITVIDAAEVSRNPTC--VTSDQTTDVSEVSLPDIESLAQLQEKYCIQC 514


>At3g25710.1 68416.m03199 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 344

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 226 SSPSGDALHDPSHNNRYPPPANTFDSK 306
           S PS D LH PS+  RY  P + F+ +
Sbjct: 38  SLPSFDPLHFPSNPTRYSDPVHYFNRR 64


>At2g19630.1 68415.m02293 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 297

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
 Frame = -1

Query: 552 VRICVLRTHRTNDDGIA--GRYIVLIDVLQFDVR*VRVRVHSQLYRYVVGQLHELLAIRH 379
           ++ C+   HR+ D GI   G       V   D+  V   V S+ +R+++G LH    I +
Sbjct: 120 IQCCI--PHRSFDGGICIDGLIYYYAGVNNNDIVIVCFDVRSEEFRFIIGALHHGSLINY 177

Query: 378 RXRLTPLLVAVI 343
             +L+  L + +
Sbjct: 178 NGKLSLYLPSTV 189


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,979,436
Number of Sequences: 28952
Number of extensions: 336574
Number of successful extensions: 1128
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1081
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1128
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)