Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30600
         (760 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1834.01 |sup45||translation release factor eRF1|Schizosaccha...    31   0.13 
SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces pomb...    27   3.8  
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    27   3.8  
SPAC1751.03 ||SPAC31A2.01|translation initiation factor eIF3m|Sc...    27   3.8  
SPCC777.09c |arg1||acetylornithine aminotransferase|Schizosaccha...    26   5.1  
SPAC23C4.06c |||methyltransferase |Schizosaccharomyces pombe|chr...    25   8.9  

>SPAC1834.01 |sup45||translation release factor
           eRF1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 433

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 12/41 (29%), Positives = 25/41 (60%)
 Frame = +3

Query: 132 FASLQTLDCLDTRALYSRLNFFDIDLLKYSAENKNGNVMVS 254
           F  + T++ L   A+ + L F D+D+++Y  +N  GN +++
Sbjct: 300 FGVVDTMNALQEGAVETLLCFADLDMIRYEFKNSEGNPVIT 340


>SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 457

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +2

Query: 347 VKDDLREQLNLYLKALHSNSTETVLEN 427
           +KD+L EQ+NL      +NST T++++
Sbjct: 47  LKDELVEQMNLLDSRRSTNSTRTIVDS 73


>SPBC12C2.02c |ste20|ste16|sterility protein
           Ste20|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1309

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = -1

Query: 265 YTCCDTITLPFLFSAEYFSKSISKKFNREYSARVSR 158
           ++CC  + LP++ S    S + + +  RE + R+ R
Sbjct: 292 FSCCQMLNLPWILSKSLLSGTDAYQIEREQAFRLIR 327


>SPAC1751.03 ||SPAC31A2.01|translation initiation factor
           eIF3m|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 402

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = +2

Query: 275 LAMLLEGATGETADEIRSALRLSSVKDDLREQLNLYLKALH--SNSTETVLENANAIFVS 448
           LAM L+     T   + +  R     ++++E LNL+L  L   + + E  LE   A+F++
Sbjct: 21  LAMYLDNLEANTDKNVLALCREYLASENVKEVLNLFLTRLPLLAQAPEKELEPILAVFIN 80


>SPCC777.09c |arg1||acetylornithine
           aminotransferase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 441

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +1

Query: 139 AFRRWIVLIHEHCTPD*TSSILI 207
           AFRR++ L H+  TPD TS  +I
Sbjct: 18  AFRRFVSLTHKDPTPDTTSCNII 40


>SPAC23C4.06c |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 327

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +1

Query: 595 SIVDQAQINASTEMIVTNALYFKGSWMQAFNPKFTRP 705
           SIVD   INA T + V         W +AF+PK T P
Sbjct: 98  SIVDSIHINADTVLPV---------WSEAFSPKSTLP 125


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,060,714
Number of Sequences: 5004
Number of extensions: 60984
Number of successful extensions: 154
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)