Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30600
(760 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502... 56 4e-08
03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869 54 9e-08
01_01_1152 + 9170628-9171899 50 2e-06
11_02_0014 - 7352619-7352918,7353173-7353418 50 3e-06
11_02_0011 - 7337618-7338496,7338596-7338991 50 3e-06
11_01_0771 + 6453130-6454488 48 6e-06
11_01_0767 + 6438648-6438809,6439146-6440000 48 1e-05
11_01_0750 - 6315126-6315896,6316371-6316784 47 1e-05
11_02_0012 - 7346282-7347136,7347234-7347593 46 3e-05
01_06_0824 - 32243495-32244319,32244449-32244859 46 3e-05
04_04_0619 + 26652923-26653267,26653440-26654273 37 0.015
01_04_0137 + 16522157-16522601,16522658-16522712,16523655-165238... 30 1.7
08_01_0447 + 3954917-3954919,3954965-3955217,3955763-3956126,395... 30 2.3
06_01_0872 + 6687849-6687864,6689622-6690235,6690927-6691478 28 9.3
>03_05_0293 +
22849103-22849513,22849670-22849756,22850156-22850284,
22850507-22851262,22853474-22854250
Length = 719
Score = 55.6 bits (128), Expect = 4e-08
Identities = 23/56 (41%), Positives = 36/56 (64%)
Frame = +1
Query: 550 QINAWVNGKTKGLIPSIVDQAQINASTEMIVTNALYFKGSWMQAFNPKFTRPACFY 717
Q+N+WV+ T GLI +I IN +T++++ NALYFKG+W + F+ T F+
Sbjct: 468 QVNSWVDRVTSGLIKNIATPRSINHNTKLVLANALYFKGAWAEKFDVSKTEDGEFH 523
Score = 54.8 bits (126), Expect = 7e-08
Identities = 22/58 (37%), Positives = 36/58 (62%)
Frame = +1
Query: 544 AQQINAWVNGKTKGLIPSIVDQAQINASTEMIVTNALYFKGSWMQAFNPKFTRPACFY 717
A Q+N+WV T GLI I+ ++ +T +++ NALYFKG+W + F+ T+ F+
Sbjct: 214 ASQVNSWVEKVTSGLIKEILPPGSVDHTTRLVLGNALYFKGAWTEKFDASKTKDGEFH 271
>03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869
Length = 258
Score = 54.4 bits (125), Expect = 9e-08
Identities = 22/57 (38%), Positives = 36/57 (63%)
Frame = +1
Query: 544 AQQINAWVNGKTKGLIPSIVDQAQINASTEMIVTNALYFKGSWMQAFNPKFTRPACF 714
A Q+N+WV+ T GLI I+ ++ +T +++ NALYFKG+W + F+ T+ F
Sbjct: 6 ASQVNSWVDRVTSGLIKEILPPGSVDHTTRLVLGNALYFKGAWTEKFDASKTKDGEF 62
>01_01_1152 + 9170628-9171899
Length = 423
Score = 50.0 bits (114), Expect = 2e-06
Identities = 20/57 (35%), Positives = 39/57 (68%)
Frame = +1
Query: 547 QQINAWVNGKTKGLIPSIVDQAQINASTEMIVTNALYFKGSWMQAFNPKFTRPACFY 717
+++NA+V+ T+GLI ++ +++ST +++ NA++FKG+W F+P T A F+
Sbjct: 161 ERVNAFVSDATEGLIRDVLPPNSVDSSTVVVLANAVHFKGTWSLPFHPSATFHAPFH 217
>11_02_0014 - 7352619-7352918,7353173-7353418
Length = 181
Score = 49.6 bits (113), Expect = 3e-06
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Frame = +1
Query: 547 QQINAWVNGKTKGLIPSIVDQAQINASTEMIVTNALYFKGSWMQAFNPKFTRPACFYN-K 723
++IN WV+ T LIP I+ ++ T +++ NA+YFKG W F + T F+
Sbjct: 88 KKINEWVSKATNKLIPEILPDGSVHRLTTLVLVNAIYFKGKWSDPFPRESTTTGKFHRLD 147
Query: 724 GVCHNVAMM 750
G NV M
Sbjct: 148 GSSVNVRFM 156
>11_02_0011 - 7337618-7338496,7338596-7338991
Length = 424
Score = 49.6 bits (113), Expect = 3e-06
Identities = 20/57 (35%), Positives = 31/57 (54%)
Frame = +1
Query: 547 QQINAWVNGKTKGLIPSIVDQAQINASTEMIVTNALYFKGSWMQAFNPKFTRPACFY 717
++IN WV+ T LIP I+ ++ T +++ NA+YFKG W F T F+
Sbjct: 138 KKINKWVSKATNKLIPEILPDGSVHVDTALVLVNAIYFKGKWSNPFPRSSTTTGKFH 194
>11_01_0771 + 6453130-6454488
Length = 452
Score = 48.4 bits (110), Expect = 6e-06
Identities = 21/57 (36%), Positives = 30/57 (52%)
Frame = +1
Query: 547 QQINAWVNGKTKGLIPSIVDQAQINASTEMIVTNALYFKGSWMQAFNPKFTRPACFY 717
+QINAW T LI ++ + T +++ NA+YFKG W + FN T FY
Sbjct: 175 KQINAWARRATGKLITDVLPPRSVGPETAVVLGNAIYFKGKWDRPFNESDTERKPFY 231
>11_01_0767 + 6438648-6438809,6439146-6440000
Length = 338
Score = 47.6 bits (108), Expect = 1e-05
Identities = 20/51 (39%), Positives = 29/51 (56%)
Frame = +1
Query: 547 QQINAWVNGKTKGLIPSIVDQAQINASTEMIVTNALYFKGSWMQAFNPKFT 699
++INAWV TK LI ++ + T +V NA+YFKG W+ F+ T
Sbjct: 60 KEINAWVARATKNLITEVIKPESQSVDTRHVVGNAIYFKGEWLAPFDKSDT 110
>11_01_0750 - 6315126-6315896,6316371-6316784
Length = 394
Score = 47.2 bits (107), Expect = 1e-05
Identities = 19/56 (33%), Positives = 34/56 (60%)
Frame = +1
Query: 550 QINAWVNGKTKGLIPSIVDQAQINASTEMIVTNALYFKGSWMQAFNPKFTRPACFY 717
QIN+WV TKG + +++ I+ +T +++ +ALYF+G W+ + + T FY
Sbjct: 145 QINSWVKDSTKGTVTTLLPAGTIDQNTGLVLGSALYFRGRWLDRDDLRRTTEQKFY 200
>11_02_0012 - 7346282-7347136,7347234-7347593
Length = 404
Score = 46.0 bits (104), Expect = 3e-05
Identities = 19/57 (33%), Positives = 31/57 (54%)
Frame = +1
Query: 547 QQINAWVNGKTKGLIPSIVDQAQINASTEMIVTNALYFKGSWMQAFNPKFTRPACFY 717
++IN WV+ T LI I+ ++ T +++ NA+YFKG W F + T F+
Sbjct: 126 KKINKWVSKATNKLIREILPDGSVHGGTALVLVNAIYFKGKWSNPFPRERTTTGKFH 182
>01_06_0824 - 32243495-32244319,32244449-32244859
Length = 411
Score = 46.0 bits (104), Expect = 3e-05
Identities = 19/57 (33%), Positives = 30/57 (52%)
Frame = +1
Query: 547 QQINAWVNGKTKGLIPSIVDQAQINASTEMIVTNALYFKGSWMQAFNPKFTRPACFY 717
++IN W T G I + + ++ +T ++ NALYFKG W F+ + T FY
Sbjct: 143 REINEWFESATAGRIKDFLPKDAVDRATPAVLGNALYFKGDWESKFDARSTSDDVFY 199
>04_04_0619 + 26652923-26653267,26653440-26654273
Length = 392
Score = 37.1 bits (82), Expect = 0.015
Identities = 14/60 (23%), Positives = 33/60 (55%)
Frame = +1
Query: 544 AQQINAWVNGKTKGLIPSIVDQAQINASTEMIVTNALYFKGSWMQAFNPKFTRPACFYNK 723
A ++N +++ T G + + + +ST+ ++ NA++FK +W + F T+ F+ +
Sbjct: 120 AAEVNRFISQATNGRLNNTISPGTFGSSTKCVLANAMHFKATWGRKFESYDTQRRRFHRQ 179
>01_04_0137 +
16522157-16522601,16522658-16522712,16523655-16523807,
16525750-16525944,16526096-16526618,16526712-16527103,
16527201-16527270,16527471-16527506,16527818-16527892
Length = 647
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/54 (29%), Positives = 29/54 (53%)
Frame = -2
Query: 690 RIEGLHPRTLEVQGICHNHLCRSVDLRLIYNRRDESFGFSVNPGVYLLCYDSVI 529
R++ L +T E+Q H+ ++ +R+ R S G ++P LLC+ S+I
Sbjct: 566 RMDTLDMQTGEIQYNFTEHIAQTGSIRIKDPERKPSLGGDISPPTELLCFISLI 619
>08_01_0447 +
3954917-3954919,3954965-3955217,3955763-3956126,
3956217-3956435,3957734-3957869,3958261-3958362,
3958439-3958690,3958796-3959092
Length = 541
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = +2
Query: 341 SSVKDDLREQLNLYLKALHSNSTETVLENANAIFVSNKLRLKKDY 475
S V DD+R L+LY A E VL+ A +F +N+LR + ++
Sbjct: 97 SFVADDVRSLLSLYNAAFLRTHGEKVLDEA-IVFTTNRLRSELEH 140
>06_01_0872 + 6687849-6687864,6689622-6690235,6690927-6691478
Length = 393
Score = 27.9 bits (59), Expect = 9.3
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Frame = -3
Query: 728 TPLL*KQAGRVNLGLKACIQEPLKYRAFVTIISVE-ALICA*STIEGMSPL---VFPLTQ 561
TP+ G + LG +P +YRA +SV AL+ + + + P V LT
Sbjct: 273 TPIAEAIEGVLGLGTATTGGKPAQYRAAAVSVSVRTALVVSTTAVALAVPFFAYVVALTG 332
Query: 560 AFICCATTPLLP 525
+F+ T LLP
Sbjct: 333 SFLSATATMLLP 344
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,964,798
Number of Sequences: 37544
Number of extensions: 353241
Number of successful extensions: 937
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 937
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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