Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30600
(760 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55237| Best HMM Match : Serpin (HMM E-Value=0) 57 2e-08
SB_38975| Best HMM Match : Serpin (HMM E-Value=0) 53 2e-07
SB_55238| Best HMM Match : Serpin (HMM E-Value=0) 41 0.001
SB_12094| Best HMM Match : Myb_DNA-binding (HMM E-Value=0.00041) 31 1.3
SB_57753| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_7462| Best HMM Match : PspA_IM30 (HMM E-Value=0.15) 29 4.1
SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28) 29 4.1
SB_47942| Best HMM Match : TSP_1 (HMM E-Value=0) 29 5.4
SB_59431| Best HMM Match : Prefoldin (HMM E-Value=0.4) 28 7.2
SB_21791| Best HMM Match : V-set (HMM E-Value=1.4) 28 7.2
>SB_55237| Best HMM Match : Serpin (HMM E-Value=0)
Length = 363
Score = 56.8 bits (131), Expect = 2e-08
Identities = 23/57 (40%), Positives = 37/57 (64%)
Frame = +1
Query: 547 QQINAWVNGKTKGLIPSIVDQAQINASTEMIVTNALYFKGSWMQAFNPKFTRPACFY 717
+++NAWV+ +TKG I ++ IN+ T +I+ NA+YFKG W + F + T A F+
Sbjct: 99 KEVNAWVHQQTKGNIKELIPHGVINSLTRLIIVNAVYFKGVWKKEFGEENTFHAAFF 155
>SB_38975| Best HMM Match : Serpin (HMM E-Value=0)
Length = 380
Score = 53.2 bits (122), Expect = 2e-07
Identities = 22/54 (40%), Positives = 32/54 (59%)
Frame = +1
Query: 553 INAWVNGKTKGLIPSIVDQAQINASTEMIVTNALYFKGSWMQAFNPKFTRPACF 714
+N WV KTK I +++ + N T + + NA+YFKGSWM+ FN T+ F
Sbjct: 133 VNRWVEQKTKDKIKNLIPEGMFNKDTILCLVNAVYFKGSWMKHFNRNATQSGKF 186
Score = 31.9 bits (69), Expect = 0.58
Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Frame = +2
Query: 257 ASIKSTLAMLLEGATGETADEIRSALRLSSVKDDLREQLNLYLKALH-SNSTETVLENAN 433
ASI LAM GA G TA ++ + D+ E+ + +L+AL+ SNS + AN
Sbjct: 35 ASIVVALAMTYLGARGNTATQMTKTFHFPT---DVPEKFHDFLQALNASNSDGNQILMAN 91
Query: 434 AIFVSNKLRLKKDYETNLRYVYFSELS 514
+F + ++++ + + +E++
Sbjct: 92 RLFAQMGFEILEEFKKASKESFSAEMA 118
>SB_55238| Best HMM Match : Serpin (HMM E-Value=0)
Length = 345
Score = 41.1 bits (92), Expect = 0.001
Identities = 17/56 (30%), Positives = 29/56 (51%)
Frame = +1
Query: 547 QQINAWVNGKTKGLIPSIVDQAQINASTEMIVTNALYFKGSWMQAFNPKFTRPACF 714
+ +N WV +TK I ++ N T + + NA+YFKG W + F + + + F
Sbjct: 94 KHVNQWVEERTKKKICDLIAPGVFNMLTRLTLVNAIYFKGMWDKPFKKEHSHSSEF 149
Score = 30.7 bits (66), Expect = 1.3
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Frame = +2
Query: 281 MLLEGATGETADEIRSALRLSSVKDDL--REQLNLYLK-ALHSNSTETVLENANAIFVSN 451
M+ GA GETADE+ +A+ K L + Q + L AL++ + AN +F+
Sbjct: 1 MVYAGARGETADEMATAMHWEGHKPMLPSKHQEHKELSVALNNPGATNEMSIANNLFLQK 60
Query: 452 KLRLKKDYETNLRYVYFSELS 514
+ K++ + Y +++S
Sbjct: 61 DFSILKEFTDICQKYYDADIS 81
>SB_12094| Best HMM Match : Myb_DNA-binding (HMM E-Value=0.00041)
Length = 754
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = -3
Query: 572 PLTQAFICCATTPLLPKFTGTTPRNTHTADLSRNLS 465
PL Q C A TP + KF+ T+PR LSR S
Sbjct: 188 PLAQQLKCKAFTPKVAKFSVTSPRQKRETLLSRRRS 223
>SB_57753| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 582
Score = 30.7 bits (66), Expect = 1.3
Identities = 21/63 (33%), Positives = 30/63 (47%)
Frame = +2
Query: 281 MLLEGATGETADEIRSALRLSSVKDDLREQLNLYLKALHSNSTETVLENANAIFVSNKLR 460
MLL T E + RLS+V+ +L E L+LY+ LE+ I+ + K
Sbjct: 13 MLLSTITAEIFTSMDQLQRLSTVEKNLHETLDLYIMQERKR-----LEDLKGIYAAKKEE 67
Query: 461 LKK 469
LKK
Sbjct: 68 LKK 70
>SB_7462| Best HMM Match : PspA_IM30 (HMM E-Value=0.15)
Length = 393
Score = 29.1 bits (62), Expect = 4.1
Identities = 19/52 (36%), Positives = 28/52 (53%)
Frame = +2
Query: 332 LRLSSVKDDLREQLNLYLKALHSNSTETVLENANAIFVSNKLRLKKDYETNL 487
LRL + ++++ LN Y K LH+ + E+ I N+L K D ETNL
Sbjct: 226 LRLKLMSGNVQQILNTYKKKLHTLTMESE-RLRTEIGQRNELLFKIDAETNL 276
>SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28)
Length = 419
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = +2
Query: 320 IRSALRLSSVKDDLREQLNLYLKALHSNSTETVLENANAIFVS-NKLRLKKDYETNLRYV 496
+ ++ K ++ NLY++ L N E +LEN + + R+ +D +TN + V
Sbjct: 162 VNKGIQAQMAKQQEQDPTNLYIQNLPQNCDEAMLENMFSKYGKVISTRILRDKDTNSKGV 221
Query: 497 YFSEL 511
F+ +
Sbjct: 222 GFARM 226
>SB_47942| Best HMM Match : TSP_1 (HMM E-Value=0)
Length = 2195
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
Frame = +1
Query: 301 GGDGRRNKKCFETFVSERR--FKGTIES 378
GG+ R+ ++CF+T++ E+R G IES
Sbjct: 1888 GGEARKLQQCFQTYLGEQRSEVSGIIES 1915
>SB_59431| Best HMM Match : Prefoldin (HMM E-Value=0.4)
Length = 462
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 93 CSIMRVLICFVVAFASLQTLDCLDTRALYS 182
C + VL CF+VAF S +T+ T YS
Sbjct: 218 CQVHHVLYCFIVAFGSQRTMIIDSTGWRYS 247
>SB_21791| Best HMM Match : V-set (HMM E-Value=1.4)
Length = 474
Score = 28.3 bits (60), Expect = 7.2
Identities = 29/128 (22%), Positives = 53/128 (41%), Gaps = 3/128 (2%)
Frame = -3
Query: 746 MATLWQTPLL*KQAGRVNLGLKACIQEPLKYRAFVTIISVEALICA*STIEGMSPLVFPL 567
M L +T +L K A + L+ + +P +F I ++E+ + E S + L
Sbjct: 319 MQLLDETTILIKYASEEVVTLR--VADPNSQASFFVIYNMESTEVL-AVFENTSEKLLEL 375
Query: 566 TQAFICCATTPLL---PKFTGTTPRNTHTADLSRNLS*ALIYLKRILHSRSLKRFLLNLN 396
+ F +L +FT + NT+ + R +I K H+ ++KR L L
Sbjct: 376 FEQFCDSFRNAILHSPAQFTCSASSNTYARQIQRRFKHTIINAKYGGHTEAVKRLLAQLP 435
Query: 395 VGPSNRDS 372
+ + S
Sbjct: 436 ISSQSYSS 443
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,698,461
Number of Sequences: 59808
Number of extensions: 438731
Number of successful extensions: 1109
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1039
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1109
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -