Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30600
         (760 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.4  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.4  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   2.4  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   4.1  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   7.2  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   7.2  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    22   7.2  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -1

Query: 271 RFYTCCDTITLPFLFSAEYFSKSI 200
           +FYTCCD   L   F+     K++
Sbjct: 222 KFYTCCDEPYLDITFNITMRRKTL 245


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -1

Query: 271 RFYTCCDTITLPFLFSAEYFSKSI 200
           +FYTCCD   L   F+     K++
Sbjct: 222 KFYTCCDEPYLDITFNITMRRKTL 245


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -1

Query: 271 RFYTCCDTITLPFLFSAEYFSKSI 200
           +FYTCCD   L   F+     K++
Sbjct: 218 KFYTCCDEPYLDITFNITMRRKTL 241


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -2

Query: 153 PTSEGWRKLR 124
           P S GWRKLR
Sbjct: 214 PKSSGWRKLR 223


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +3

Query: 594 FYCRSSANQRFDR 632
           FYC ++ N  FDR
Sbjct: 313 FYCAATKNPNFDR 325


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 205 SISKKFNREYSARVSRQSNV*RLAKATT 122
           +++K  N EY   VSR+SN  +    TT
Sbjct: 444 TMNKINNHEYKRSVSRESNSNQFILMTT 471


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 581 LVFPLTQAFICCATTPLLPK 522
           ++  +  AFI C T PLL K
Sbjct: 312 IIVGMIGAFITCFTMPLLDK 331


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,733
Number of Sequences: 438
Number of extensions: 3946
Number of successful extensions: 16
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)