Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30598
         (736 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein L25|S...    86   6e-18
SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein L25|Schizosacch...    80   4e-16
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    31   0.23 
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    27   2.8  
SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2 |S...    27   3.7  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    27   3.7  
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      25   8.5  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    25   8.5  
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    25   8.5  

>SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score = 85.8 bits (203), Expect = 6e-18
 Identities = 43/74 (58%), Positives = 50/74 (67%)
 Frame = -2

Query: 474 VTKALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNII 295
           V KA  AQ+ V KG H K  RK+R S  FRRPKT E  R PKY RKS+P  +R+D Y II
Sbjct: 3   VGKAKGAQKTVQKGIHNKVARKVRTSTTFRRPKTLELARKPKYARKSVPHASRLDEYKII 62

Query: 294 KFPLTSEAAMKKIE 253
             P+ SE+AMKKIE
Sbjct: 63  VNPINSESAMKKIE 76



 Score = 65.3 bits (152), Expect = 9e-12
 Identities = 33/65 (50%), Positives = 40/65 (61%)
 Frame = -1

Query: 253 DNNTLVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRPDGKKKXXXXXXXXXXXXXXAN 74
           D+NTLVF VH  ANK  IK AVKKLY ++  K+NTLIRP+G KK              AN
Sbjct: 77  DDNTLVFHVHLKANKFTIKNAVKKLYSVDAVKINTLIRPNGTKKAFVKLSADADALDVAN 136

Query: 73  KIGII 59
           +IG +
Sbjct: 137 RIGFL 141


>SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score = 79.8 bits (188), Expect = 4e-16
 Identities = 40/74 (54%), Positives = 48/74 (64%)
 Frame = -2

Query: 474 VTKALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNII 295
           V KA  AQ+ V KG H K  +K+R S  FRRPKT +  R PKY RKS+    R+D Y II
Sbjct: 3   VAKAKGAQKTVQKGIHNKVAKKVRTSTTFRRPKTLQLSRKPKYARKSVAHAPRLDEYKII 62

Query: 294 KFPLTSEAAMKKIE 253
             P+ SE+AMKKIE
Sbjct: 63  VNPINSESAMKKIE 76



 Score = 63.3 bits (147), Expect = 3e-11
 Identities = 32/65 (49%), Positives = 39/65 (60%)
 Frame = -1

Query: 253 DNNTLVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRPDGKKKXXXXXXXXXXXXXXAN 74
           D+NTLVF VH  ANK  IK AV+KLY +   K+NTLIRP+G KK              AN
Sbjct: 77  DDNTLVFHVHLKANKFTIKEAVRKLYSVEPVKINTLIRPNGTKKAFVKLSADADALDVAN 136

Query: 73  KIGII 59
           +IG +
Sbjct: 137 RIGFL 141


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
           Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 30.7 bits (66), Expect = 0.23
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +2

Query: 44  IWNSLYDANFVGNVQCVIISSESYVRFLLTIRPDECVDF 160
           +W +++ A FV +   + +S    +RFL  ++P +C DF
Sbjct: 599 LWITVFIAKFVESYYFLTLSVRDPIRFLQRMKPYDCYDF 637


>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -2

Query: 573 SQNCQTQASSFQIEDCTEAQKDGIKGQKKVVK 478
           S+NCQ  +    +++C EA  D   G  K ++
Sbjct: 479 SENCQKLSKQIPLDECNEALFDDDNGDYKAIQ 510


>SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 316

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 20/86 (23%), Positives = 41/86 (47%), Gaps = 6/86 (6%)
 Frame = -2

Query: 561 QTQASSFQIEDCTEAQKD-GIKGQKKVVKPVTKALKAQ----RKVVKGEHGKRVRKIRNS 397
           + +   + IE+  EA++D  I  +    +   K L+ +     K+++ E   + RKI+ +
Sbjct: 40  EKEDEEYNIEEEEEAERDIEISSESSDEEAELKKLEEEGEEVEKILRDEERIKKRKIQKN 99

Query: 396 VHFRRPKTFEPPRHPKYPRKS-LPKR 322
                 +T +PP+ P     S +PK+
Sbjct: 100 RAANLQRTLQPPKRPTPSAASEVPKK 125


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 3655

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 86  QCVIISSESYVRFLLTIRPDECVDFSNIY 172
           +C+ I  E +  FL  I+P E V F  ++
Sbjct: 518 RCIEIGGEQFSGFLTNIKPFEAVTFQKLF 546


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +2

Query: 50  NSLYDANFVGNVQCVIISSESYVRFLLTIRPD 145
           ++   +NF  NV C I   +S   F   IRPD
Sbjct: 866 HTFISSNFFENVPCYISLEQSLQNFQNDIRPD 897


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
           subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = +2

Query: 29  FYS*KIWNSLYDANFVGNVQCVIISSESYVRFLLTIRPDECVDF 160
           F S  +W ++  A F+ +   + ++    +RFL  +RP +C D+
Sbjct: 503 FVSWCLWITVLVAKFLESYFFLTLNLADSIRFLGAMRPYDCRDY 546


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 7/65 (10%)
 Frame = -2

Query: 387 RRPKTFEPPRHPKYPRKSLPKRNR------MDAYNIIKFPL-TSEAAMKKIEITTPWSLL 229
           ++P TF  P  P+Y +  +PK +          + II+ P    E       ++  W  L
Sbjct: 728 KKPPTFLKPNSPEYAKTVIPKSSTNLENEYQTPWKIIQNPFKLKETTADNDPVSLRWEHL 787

Query: 228 FTQVQ 214
           + +VQ
Sbjct: 788 YMKVQ 792


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,373,271
Number of Sequences: 5004
Number of extensions: 45232
Number of successful extensions: 141
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)