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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30598
         (736 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0407 - 24983491-24983575,24983655-24984015,24984367-249844...    87   1e-17
01_03_0217 + 13879259-13879270,13880322-13880683,13880771-13880855     86   2e-17
08_02_0094 + 12277756-12278574,12280314-12280418,12280487-122805...    32   0.54 
07_01_0566 + 4207894-4207974,4208090-4208144,4208671-4208759,420...    31   0.95 
12_02_0451 - 19179592-19179648,19179745-19179879,19180214-191802...    29   5.1  
01_01_1206 - 9702128-9702184,9702272-9702323,9702410-9702471,970...    28   6.7  

>04_04_0407 -
           24983491-24983575,24983655-24984015,24984367-24984406,
           24984466-24984468
          Length = 162

 Score = 87.4 bits (207), Expect = 1e-17
 Identities = 41/72 (56%), Positives = 51/72 (70%)
 Frame = -2

Query: 468 KALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKF 289
           +ALKA + V  G   K  +KIR SV F RPKT +  R PKYPR S P RN++D Y I+K+
Sbjct: 26  QALKAAKAVKSGTAKKTTKKIRTSVTFHRPKTLKKSRDPKYPRVSTPGRNKLDQYQILKY 85

Query: 288 PLTSEAAMKKIE 253
           PLT+E+AMKKIE
Sbjct: 86  PLTTESAMKKIE 97



 Score = 77.0 bits (181), Expect = 1e-14
 Identities = 41/65 (63%), Positives = 43/65 (66%)
 Frame = -1

Query: 253 DNNTLVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRPDGKKKXXXXXXXXXXXXXXAN 74
           DNNTLVFIV   A+K  IKAAVKK+YDI   KVNTLIRPDGKKK              AN
Sbjct: 98  DNNTLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPDGKKKAYVKLTPDYDALDVAN 157

Query: 73  KIGII 59
           KIGII
Sbjct: 158 KIGII 162


>01_03_0217 + 13879259-13879270,13880322-13880683,13880771-13880855
          Length = 152

 Score = 86.2 bits (204), Expect = 2e-17
 Identities = 41/80 (51%), Positives = 53/80 (66%)
 Frame = -2

Query: 492 KKVVKPVTKALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRM 313
           KK      +ALK  + V  G   ++ +KIR SV F RPKT +  R PKYPR S P RN++
Sbjct: 8   KKADGKTQQALKVAKAVKSGSIKRKSKKIRTSVTFHRPKTLKKARDPKYPRVSAPGRNKL 67

Query: 312 DAYNIIKFPLTSEAAMKKIE 253
           D Y I+K+PLT+E+AMKKIE
Sbjct: 68  DQYQILKYPLTTESAMKKIE 87



 Score = 77.0 bits (181), Expect = 1e-14
 Identities = 41/65 (63%), Positives = 43/65 (66%)
 Frame = -1

Query: 253 DNNTLVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRPDGKKKXXXXXXXXXXXXXXAN 74
           DNNTLVFIV   A+K  IKAAVKK+YDI   KVNTLIRPDGKKK              AN
Sbjct: 88  DNNTLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPDGKKKAYVKLTPDYDALDVAN 147

Query: 73  KIGII 59
           KIGII
Sbjct: 148 KIGII 152


>08_02_0094 +
           12277756-12278574,12280314-12280418,12280487-12280543,
           12280969-12281041,12281525-12281703,12281788-12281961,
           12282041-12282326,12282433-12282509,12282599-12282668,
           12282751-12282822,12282920-12283155,12283240-12283374,
           12283466-12283761,12284237-12284408,12284510-12284608,
           12284704-12284835,12284950-12285050,12285426-12285615,
           12285723-12285761
          Length = 1103

 Score = 31.9 bits (69), Expect = 0.54
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = -1

Query: 283 HV*SSNEED*DNNTLVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRP 137
           +V S +  D + + L+  +H     H IK  +KK YD + +K   +I+P
Sbjct: 286 NVDSESSSDSELDDLILRMHRKEVVHEIKRHLKKSYDFHTSKCTLIIKP 334


>07_01_0566 +
           4207894-4207974,4208090-4208144,4208671-4208759,
           4209742-4209794,4209966-4210120,4210201-4210528,
           4210618-4210730,4211394-4211538,4211951-4212259,
           4212340-4212420,4212989-4213349
          Length = 589

 Score = 31.1 bits (67), Expect = 0.95
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = -2

Query: 441 VKGEHGKRVRKIR-NSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYN 301
           +KGE  K++R+   NS   +R KT +PP H K  +K   K    D+Y+
Sbjct: 140 LKGEKEKKLRRTEDNSAAEKRVKTQKPPTHDKQKKKR--KHYSSDSYS 185


>12_02_0451 -
           19179592-19179648,19179745-19179879,19180214-19180247,
           19180347-19180423,19180523-19180598,19180792-19180925,
           19181772-19181878,19182505-19182808,19182913-19183218
          Length = 409

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = -2

Query: 588 GCGNSSQNCQTQASSFQIEDCTEAQKDGIKGQKKVVKPVTK 466
           GC NSS+NC T +   Q    T+  K  I  +K+  K V K
Sbjct: 87  GCANSSKNCTTTSKLQQKSKPTQRVKQ-IPSKKQCAKKVPK 126


>01_01_1206 -
           9702128-9702184,9702272-9702323,9702410-9702471,
           9702578-9702665,9703027-9703095,9703224-9703281,
           9703895-9703996,9704075-9704179,9704273-9704624,
           9706005-9706100,9706427-9706501,9707192-9707370,
           9707501-9707740,9707922-9708017,9708193-9708306,
           9708428-9708527
          Length = 614

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 13/39 (33%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
 Frame = -2

Query: 522 EAQKDGIKGQKKVVKPVTKALKAQRKVV-KGEHGKRVRK 409
           EA+   +KG++K+++ +   L  Q+K++ K E  +R+RK
Sbjct: 162 EAELAKLKGEEKILQGLVDKLTEQKKLIEKAEEEERLRK 200


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,164,018
Number of Sequences: 37544
Number of extensions: 285646
Number of successful extensions: 737
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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