Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30598
(736 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0407 - 24983491-24983575,24983655-24984015,24984367-249844... 87 1e-17
01_03_0217 + 13879259-13879270,13880322-13880683,13880771-13880855 86 2e-17
08_02_0094 + 12277756-12278574,12280314-12280418,12280487-122805... 32 0.54
07_01_0566 + 4207894-4207974,4208090-4208144,4208671-4208759,420... 31 0.95
12_02_0451 - 19179592-19179648,19179745-19179879,19180214-191802... 29 5.1
01_01_1206 - 9702128-9702184,9702272-9702323,9702410-9702471,970... 28 6.7
>04_04_0407 -
24983491-24983575,24983655-24984015,24984367-24984406,
24984466-24984468
Length = 162
Score = 87.4 bits (207), Expect = 1e-17
Identities = 41/72 (56%), Positives = 51/72 (70%)
Frame = -2
Query: 468 KALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKF 289
+ALKA + V G K +KIR SV F RPKT + R PKYPR S P RN++D Y I+K+
Sbjct: 26 QALKAAKAVKSGTAKKTTKKIRTSVTFHRPKTLKKSRDPKYPRVSTPGRNKLDQYQILKY 85
Query: 288 PLTSEAAMKKIE 253
PLT+E+AMKKIE
Sbjct: 86 PLTTESAMKKIE 97
Score = 77.0 bits (181), Expect = 1e-14
Identities = 41/65 (63%), Positives = 43/65 (66%)
Frame = -1
Query: 253 DNNTLVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRPDGKKKXXXXXXXXXXXXXXAN 74
DNNTLVFIV A+K IKAAVKK+YDI KVNTLIRPDGKKK AN
Sbjct: 98 DNNTLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPDGKKKAYVKLTPDYDALDVAN 157
Query: 73 KIGII 59
KIGII
Sbjct: 158 KIGII 162
>01_03_0217 + 13879259-13879270,13880322-13880683,13880771-13880855
Length = 152
Score = 86.2 bits (204), Expect = 2e-17
Identities = 41/80 (51%), Positives = 53/80 (66%)
Frame = -2
Query: 492 KKVVKPVTKALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRM 313
KK +ALK + V G ++ +KIR SV F RPKT + R PKYPR S P RN++
Sbjct: 8 KKADGKTQQALKVAKAVKSGSIKRKSKKIRTSVTFHRPKTLKKARDPKYPRVSAPGRNKL 67
Query: 312 DAYNIIKFPLTSEAAMKKIE 253
D Y I+K+PLT+E+AMKKIE
Sbjct: 68 DQYQILKYPLTTESAMKKIE 87
Score = 77.0 bits (181), Expect = 1e-14
Identities = 41/65 (63%), Positives = 43/65 (66%)
Frame = -1
Query: 253 DNNTLVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRPDGKKKXXXXXXXXXXXXXXAN 74
DNNTLVFIV A+K IKAAVKK+YDI KVNTLIRPDGKKK AN
Sbjct: 88 DNNTLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPDGKKKAYVKLTPDYDALDVAN 147
Query: 73 KIGII 59
KIGII
Sbjct: 148 KIGII 152
>08_02_0094 +
12277756-12278574,12280314-12280418,12280487-12280543,
12280969-12281041,12281525-12281703,12281788-12281961,
12282041-12282326,12282433-12282509,12282599-12282668,
12282751-12282822,12282920-12283155,12283240-12283374,
12283466-12283761,12284237-12284408,12284510-12284608,
12284704-12284835,12284950-12285050,12285426-12285615,
12285723-12285761
Length = 1103
Score = 31.9 bits (69), Expect = 0.54
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = -1
Query: 283 HV*SSNEED*DNNTLVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRP 137
+V S + D + + L+ +H H IK +KK YD + +K +I+P
Sbjct: 286 NVDSESSSDSELDDLILRMHRKEVVHEIKRHLKKSYDFHTSKCTLIIKP 334
>07_01_0566 +
4207894-4207974,4208090-4208144,4208671-4208759,
4209742-4209794,4209966-4210120,4210201-4210528,
4210618-4210730,4211394-4211538,4211951-4212259,
4212340-4212420,4212989-4213349
Length = 589
Score = 31.1 bits (67), Expect = 0.95
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = -2
Query: 441 VKGEHGKRVRKIR-NSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYN 301
+KGE K++R+ NS +R KT +PP H K +K K D+Y+
Sbjct: 140 LKGEKEKKLRRTEDNSAAEKRVKTQKPPTHDKQKKKR--KHYSSDSYS 185
>12_02_0451 -
19179592-19179648,19179745-19179879,19180214-19180247,
19180347-19180423,19180523-19180598,19180792-19180925,
19181772-19181878,19182505-19182808,19182913-19183218
Length = 409
Score = 28.7 bits (61), Expect = 5.1
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = -2
Query: 588 GCGNSSQNCQTQASSFQIEDCTEAQKDGIKGQKKVVKPVTK 466
GC NSS+NC T + Q T+ K I +K+ K V K
Sbjct: 87 GCANSSKNCTTTSKLQQKSKPTQRVKQ-IPSKKQCAKKVPK 126
>01_01_1206 -
9702128-9702184,9702272-9702323,9702410-9702471,
9702578-9702665,9703027-9703095,9703224-9703281,
9703895-9703996,9704075-9704179,9704273-9704624,
9706005-9706100,9706427-9706501,9707192-9707370,
9707501-9707740,9707922-9708017,9708193-9708306,
9708428-9708527
Length = 614
Score = 28.3 bits (60), Expect = 6.7
Identities = 13/39 (33%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Frame = -2
Query: 522 EAQKDGIKGQKKVVKPVTKALKAQRKVV-KGEHGKRVRK 409
EA+ +KG++K+++ + L Q+K++ K E +R+RK
Sbjct: 162 EAELAKLKGEEKILQGLVDKLTEQKKLIEKAEEEERLRK 200
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,164,018
Number of Sequences: 37544
Number of extensions: 285646
Number of successful extensions: 737
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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