Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30598
         (736 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57676| Best HMM Match : No HMM Matches (HMM E-Value=.)              85   4e-17
SB_41793| Best HMM Match : Ribosomal_L23 (HMM E-Value=1.9e-17)         75   5e-14
SB_38133| Best HMM Match : TolA (HMM E-Value=0.38)                     32   0.55 
SB_52395| Best HMM Match : TP2 (HMM E-Value=7.8)                       32   0.55 
SB_47629| Best HMM Match : Vicilin_N (HMM E-Value=1.1)                 32   0.55 
SB_22450| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_10378| Best HMM Match : TSGP1 (HMM E-Value=2)                       29   3.9  
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)                  28   6.8  
SB_57588| Best HMM Match : Vicilin_N (HMM E-Value=1.4)                 28   9.0  
SB_32271| Best HMM Match : Antimicrobial18 (HMM E-Value=1.6)           28   9.0  

>SB_57676| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 275

 Score = 85.4 bits (202), Expect = 4e-17
 Identities = 40/72 (55%), Positives = 51/72 (70%)
 Frame = -2

Query: 468 KALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKF 289
           KA KA++ V KG    + +K+R SV F RPKT    R+PKYPR S P+ N++D Y IIK 
Sbjct: 138 KAQKAKKAVQKGVRAAKTKKVRTSVKFHRPKTLSLRRNPKYPRTSAPRINKLDHYAIIKH 197

Query: 288 PLTSEAAMKKIE 253
           PLT+E+AMKKIE
Sbjct: 198 PLTTESAMKKIE 209



 Score = 75.4 bits (177), Expect = 5e-14
 Identities = 38/63 (60%), Positives = 43/63 (68%)
 Frame = -1

Query: 253 DNNTLVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRPDGKKKXXXXXXXXXXXXXXAN 74
           DNNTLVFIV   ANK  IKAAVKKLYDI V+KVNTL+RPDG+KK              +N
Sbjct: 210 DNNTLVFIVDVRANKPQIKAAVKKLYDIVVSKVNTLVRPDGQKKAYVRLAPDYDALDVSN 269

Query: 73  KIG 65
           K+G
Sbjct: 270 KVG 272


>SB_41793| Best HMM Match : Ribosomal_L23 (HMM E-Value=1.9e-17)
          Length = 71

 Score = 75.4 bits (177), Expect = 5e-14
 Identities = 38/63 (60%), Positives = 43/63 (68%)
 Frame = -1

Query: 253 DNNTLVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRPDGKKKXXXXXXXXXXXXXXAN 74
           DNNTLVFIV   ANK  IKAAVKKLYDI V+KVNTL+RPDG+KK              +N
Sbjct: 6   DNNTLVFIVDVRANKPQIKAAVKKLYDIVVSKVNTLVRPDGQKKAYVRLAPDYDALDVSN 65

Query: 73  KIG 65
           K+G
Sbjct: 66  KVG 68


>SB_38133| Best HMM Match : TolA (HMM E-Value=0.38)
          Length = 2114

 Score = 31.9 bits (69), Expect = 0.55
 Identities = 23/98 (23%), Positives = 42/98 (42%), Gaps = 2/98 (2%)
 Frame = -2

Query: 582 GNSSQNCQTQASSFQIEDCTEAQKDGIKGQKKVVK--PVTKALKAQRKVVKGEHGKRVRK 409
           G S+   + +A   QI      Q D   G + V++  P   A   +         +  R+
Sbjct: 408 GASTVQAEPEAEPEQIAAAMRQQSDSKPGNQLVLEEEPENAARGIKPPPFASLQDQAARE 467

Query: 408 IRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNII 295
           ++   +FR P T+ P R+P + R  +   N+MD   ++
Sbjct: 468 MKLGANFRAPPTYGPFRNPGFQRAQM--ANQMDQNELV 503


>SB_52395| Best HMM Match : TP2 (HMM E-Value=7.8)
          Length = 149

 Score = 31.9 bits (69), Expect = 0.55
 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
 Frame = -2

Query: 393 HFRRPKTFEPPRHPKYPRKSLPKRN-RMDAYNIIKF---PLTSEAAMKKIEITT 244
           H   P+ F PP+H   PRK  P +N  +   N+      PL   +A KKI  TT
Sbjct: 66  HRALPRKFWPPKHRALPRKFWPSKNIALTTENLAPKKIPPLPGNSAPKKIAPTT 119


>SB_47629| Best HMM Match : Vicilin_N (HMM E-Value=1.1)
          Length = 599

 Score = 31.9 bits (69), Expect = 0.55
 Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 4/99 (4%)
 Frame = -2

Query: 591 EGCGNSSQNCQTQASSFQIEDCTEAQKDGIKGQKKVVKPVTKALKAQRKVVKGEHGKRVR 412
           EG  N+  + + Q  + + E   E Q +    +++  K   K  +   K+VKGE  K+ +
Sbjct: 489 EGEENTKSHEEHQQRTKEREKPKEEQANDSNWKQEKGKDREKKQEKIGKLVKGEKSKKQK 548

Query: 411 KIRNSVHFRRPKTFEPPRHPKYPRK----SLPKRNRMDA 307
           +     H +  K       PK PRK    S P+R   DA
Sbjct: 549 RGEREDHGKTSKDNRKSTSPKEPRKTQNESKPQRESPDA 587


>SB_22450| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2806

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 17/51 (33%), Positives = 30/51 (58%)
 Frame = -2

Query: 549  SSFQIEDCTEAQKDGIKGQKKVVKPVTKALKAQRKVVKGEHGKRVRKIRNS 397
            SS Q E   +   +  KG++K++  +T+ L + RKVVK +  + V+  +NS
Sbjct: 2293 SSRQQETSPKKSPNSGKGKEKILHELTQYLNSDRKVVKNK-SRNVKSPQNS 2342


>SB_10378| Best HMM Match : TSGP1 (HMM E-Value=2)
          Length = 114

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -2

Query: 423 KRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAY 304
           K+ RK +     R+PK  + PR PK P+K   ++N+   +
Sbjct: 68  KKPRKPKKPKKPRKPKKPKKPRKPKKPKKGKWRKNKQGGH 107


>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
          Length = 1313

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 22/86 (25%), Positives = 35/86 (40%)
 Frame = -2

Query: 582  GNSSQNCQTQASSFQIEDCTEAQKDGIKGQKKVVKPVTKALKAQRKVVKGEHGKRVRKIR 403
            G+SS      +SS        +   G     KV K V +A    ++VVK     + + + 
Sbjct: 1033 GSSSSGSSRSSSSSSSGSSASSSSSG-NDAAKVKKEVKEAKGESKEVVKESKEVKNKALP 1091

Query: 402  NSVHFRRPKTFEPPRHPKYPRKSLPK 325
            +S    +     PP  P+  R+SL K
Sbjct: 1092 DSKPAVKSSPSPPPTKPRPSRRSLSK 1117


>SB_57588| Best HMM Match : Vicilin_N (HMM E-Value=1.4)
          Length = 756

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +2

Query: 311 SMRFLLGRDFLGYLGCLGGSNVLGLRKC 394
           SMR++ G  F+G L C  G + L LR C
Sbjct: 636 SMRYINGLHFIGLLLCAVGLSCLVLRTC 663


>SB_32271| Best HMM Match : Antimicrobial18 (HMM E-Value=1.6)
          Length = 154

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +1

Query: 358 PRRFKRLGSAEMHRVANFPYSLPMFTFYNLPLSL 459
           PRR +R+   ++ +  N P +  +F +YNL + L
Sbjct: 49  PRRCRRVSDEQVEKSPNEPKAQSLFLWYNLAIRL 82


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,720,412
Number of Sequences: 59808
Number of extensions: 339257
Number of successful extensions: 974
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 966
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)