Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30598
(736 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40948-2|AAA81728.1| 147|Caenorhabditis elegans Ribosomal prote... 87 9e-18
Z75541-4|CAA99858.1| 146|Caenorhabditis elegans Hypothetical pr... 81 8e-16
AF099916-1|AAC68775.1| 120|Caenorhabditis elegans Spt transcrip... 30 2.0
AF036692-5|AAS47681.1| 319|Caenorhabditis elegans Serpentine re... 29 2.6
U41009-8|AAA82282.2| 500|Caenorhabditis elegans Hypothetical pr... 29 3.4
AC024797-3|AAF60706.1| 112|Caenorhabditis elegans Hypothetical ... 29 3.4
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr... 29 4.5
U41036-4|AAT92061.1| 1018|Caenorhabditis elegans Hypothetical pr... 28 6.0
U41036-3|AAL06055.1| 1030|Caenorhabditis elegans Hypothetical pr... 28 6.0
U41036-2|AAA82385.2| 1086|Caenorhabditis elegans Hypothetical pr... 28 6.0
AF003384-2|AAL08040.1| 428|Caenorhabditis elegans Acyltransfera... 28 7.9
AF003384-1|AAK71374.2| 415|Caenorhabditis elegans Acyltransfera... 28 7.9
>U40948-2|AAA81728.1| 147|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 25.1 protein.
Length = 147
Score = 87.4 bits (207), Expect = 9e-18
Identities = 40/72 (55%), Positives = 54/72 (75%)
Frame = -2
Query: 468 KALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKF 289
KAL A++KVVKG+ R++R SVHFRRP T + R ++PRKS PK ++MD + II+
Sbjct: 11 KALDAKKKVVKGKRTTHRRQVRTSVHFRRPVTLKTARQARFPRKSAPKTSKMDHFRIIQH 70
Query: 288 PLTSEAAMKKIE 253
PLT+E+AMKKIE
Sbjct: 71 PLTTESAMKKIE 82
Score = 59.3 bits (137), Expect = 3e-09
Identities = 32/65 (49%), Positives = 39/65 (60%)
Frame = -1
Query: 253 DNNTLVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRPDGKKKXXXXXXXXXXXXXXAN 74
++NTLVFIV ANK+ IK AV KLY++ KVNTLI P +KK AN
Sbjct: 83 EHNTLVFIVSNDANKYQIKDAVHKLYNVQALKVNTLITPLQQKKAYVRLTADYDALDVAN 142
Query: 73 KIGII 59
KIG+I
Sbjct: 143 KIGVI 147
>Z75541-4|CAA99858.1| 146|Caenorhabditis elegans Hypothetical
protein F52B5.6 protein.
Length = 146
Score = 81.0 bits (191), Expect = 8e-16
Identities = 37/74 (50%), Positives = 53/74 (71%)
Frame = -2
Query: 474 VTKALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNII 295
V KA++A++ VVKG + +R SVHFRRPKT R P+Y RKS P R+++D++ +I
Sbjct: 8 VGKAIQAKKAVVKGSKTNVRKNVRTSVHFRRPKTLVTARAPRYARKSAPARDKLDSFAVI 67
Query: 294 KFPLTSEAAMKKIE 253
K P T+E++MKKIE
Sbjct: 68 KAPHTTESSMKKIE 81
Score = 63.7 bits (148), Expect = 1e-10
Identities = 36/72 (50%), Positives = 42/72 (58%)
Frame = -1
Query: 274 SSNEED*DNNTLVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRPDGKKKXXXXXXXXX 95
SS ++ D+NTLVFIV ANKHHIK AV LY++ KVNTLI P +KK
Sbjct: 75 SSMKKIEDHNTLVFIVDEKANKHHIKRAVHALYNVKAVKVNTLITPLQQKKAYVRLASDY 134
Query: 94 XXXXXANKIGII 59
ANKIG I
Sbjct: 135 DALDVANKIGFI 146
>AF099916-1|AAC68775.1| 120|Caenorhabditis elegans Spt
transcription factor familyprotein 4 protein.
Length = 120
Score = 29.9 bits (64), Expect = 2.0
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = -2
Query: 603 TFS*EGCGNSSQNCQTQASSFQIEDCTEAQKDG-IKGQKKVVKPVTKALKAQRKV 442
+F EGC N + ++ DCT A DG I V K K QRKV
Sbjct: 26 SFQKEGCENCEDVLHLKGDEEKVYDCTSANYDGMIAAMSNNESWVCKWQKMQRKV 80
>AF036692-5|AAS47681.1| 319|Caenorhabditis elegans Serpentine
receptor, class x protein13 protein.
Length = 319
Score = 29.5 bits (63), Expect = 2.6
Identities = 38/172 (22%), Positives = 63/172 (36%), Gaps = 14/172 (8%)
Frame = +2
Query: 95 IISSESYVRFLLTIRPDECVDFSNIYIIEFLDCSLDMVLVCTCVNN----KDQGVVISIF 262
+IS S V +T R D + + I+ + F +++ + + N G +
Sbjct: 10 VISENSEVLQEIT-REDVLLAAAIIFFVAFFGLIFNLLGITVVMKNPILKNSFGTLCLSH 68
Query: 263 FIAASDVRGNLMML*ASMRFLLGRDFLGYLG-CLGGSNVLGLRKCTEL-------RIFRT 418
IA S V + A ++ ++ G LG LG N+L C R F
Sbjct: 69 SIANSGVLFVFFIWSAPTTYIQAQNVGGMLGKLLGQLNILCWDACVYSHLAISFNRFFSI 128
Query: 419 LFPCSPFTTFL*ALSALVTGFTTF--FCPLIPSFWASVQSSIWKLLAWVWQF 568
P F + ++ G F FC + P FW + ++W W F
Sbjct: 129 AIPARAIFIFSRQNTLVIIGIVWFIAFCHIFPYFWYDKCFITYNPISWTWNF 180
>U41009-8|AAA82282.2| 500|Caenorhabditis elegans Hypothetical
protein C06E7.4 protein.
Length = 500
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = -2
Query: 486 VVKPVTKALKAQRKVVKGEHGKRVRKI-RNSVHFRRPKTFEPPRHPKYPR 340
++ P K LK K+ K +H K ++K+ + + P PP HP Y R
Sbjct: 108 LIPPDAKTLKKLEKMEK-KHQKLMKKLGARGIPIQMPVPPPPPMHPMYSR 156
>AC024797-3|AAF60706.1| 112|Caenorhabditis elegans Hypothetical
protein Y48G8AR.3 protein.
Length = 112
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -2
Query: 396 VHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKFPLTSEAAM 265
+ FRR + RH R+++P ++ I KFP SE A+
Sbjct: 1 MEFRRKCSRSAMRHKSQKRRAMPNQDVEKVNEIFKFPRISEQAL 44
>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
C41A3.1 protein.
Length = 7829
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +1
Query: 415 YSLPMFTFYNLPLSLKCFSNRFHYFF 492
+S + FYNL L KCFS FH+ F
Sbjct: 3293 FSKKVTFFYNL-LQSKCFSKHFHWLF 3317
>U41036-4|AAT92061.1| 1018|Caenorhabditis elegans Hypothetical
protein T14E8.1c protein.
Length = 1018
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +2
Query: 59 YDANFVGNVQCVI-ISSESYVRFLLTIRPDECVDFSNIYI 175
YD + Q + I+ ++YV+ ++RPD VDF N+ +
Sbjct: 696 YDMGHMAGRQAQLAINGDNYVKVFRSMRPDLKVDFKNLRV 735
>U41036-3|AAL06055.1| 1030|Caenorhabditis elegans Hypothetical
protein T14E8.1b protein.
Length = 1030
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +2
Query: 59 YDANFVGNVQCVI-ISSESYVRFLLTIRPDECVDFSNIYI 175
YD + Q + I+ ++YV+ ++RPD VDF N+ +
Sbjct: 696 YDMGHMAGRQAQLAINGDNYVKVFRSMRPDLKVDFKNLRV 735
>U41036-2|AAA82385.2| 1086|Caenorhabditis elegans Hypothetical
protein T14E8.1a protein.
Length = 1086
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +2
Query: 59 YDANFVGNVQCVI-ISSESYVRFLLTIRPDECVDFSNIYI 175
YD + Q + I+ ++YV+ ++RPD VDF N+ +
Sbjct: 696 YDMGHMAGRQAQLAINGDNYVKVFRSMRPDLKVDFKNLRV 735
>AF003384-2|AAL08040.1| 428|Caenorhabditis elegans
Acyltransferase-like protein 14,isoform b protein.
Length = 428
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +2
Query: 431 SPFTTFL*ALSALVTGFTTFFCPLIPSFWASVQSSIWKLLAW 556
+PF T + LS + F T+F ++P WA ++W L W
Sbjct: 42 APFRTLM-CLSLVTIFFATYFGFMLPVMWA---RTVWPRLYW 79
>AF003384-1|AAK71374.2| 415|Caenorhabditis elegans
Acyltransferase-like protein 14,isoform a protein.
Length = 415
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +2
Query: 431 SPFTTFL*ALSALVTGFTTFFCPLIPSFWASVQSSIWKLLAW 556
+PF T + LS + F T+F ++P WA ++W L W
Sbjct: 40 APFRTLM-CLSLVTIFFATYFGFMLPVMWA---RTVWPRLYW 77
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,231,985
Number of Sequences: 27780
Number of extensions: 262584
Number of successful extensions: 948
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 948
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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