Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30598
         (736 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    24   1.3  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    24   1.7  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   3.0  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   5.2  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   9.1  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   9.1  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   9.1  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -2

Query: 585 CGNSSQNCQTQASSFQIEDCTEAQKDGIK 499
           C NS +N     S+     C EA KD +K
Sbjct: 163 CCNSPENNTCSISNSYTNGCVEALKDTVK 191


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -1

Query: 244 TLVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRP 137
           T++ I+  SA   H     K+LYD  ++  N LIRP
Sbjct: 5   TIILIL--SARICHGNPDAKRLYDDLLSNYNRLIRP 38


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 187 KKLYDINVAKVNTLIRPDG 131
           K+LYD  ++  N LIRP G
Sbjct: 22  KRLYDDLLSNYNRLIRPVG 40


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = -1

Query: 247 NTLVFIVHTSANK-HHIKAAVKKLYDINVAKVNTLIRP 137
           NTL  I   +  K        K+LYD  ++  N LIRP
Sbjct: 14  NTLHIIYSVAGLKIFEANPDTKRLYDDLLSNYNRLIRP 51


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 187 KKLYDINVAKVNTLIRP 137
           K+LYD  ++  N L+RP
Sbjct: 30  KRLYDDLLSNYNKLVRP 46


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 187 KKLYDINVAKVNTLIRP 137
           K+LYD  ++  N L+RP
Sbjct: 30  KRLYDDLLSNYNKLVRP 46


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 187 KKLYDINVAKVNTLIRP 137
           K+LYD  ++  N L+RP
Sbjct: 26  KRLYDDLLSNYNKLVRP 42


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,923
Number of Sequences: 438
Number of extensions: 3070
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)