Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30598
(736 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g55280.1 68416.m06139 60S ribosomal protein L23A (RPL23aB) va... 85 6e-17
At2g39460.1 68415.m04843 60S ribosomal protein L23A (RPL23aA) id... 81 7e-16
At4g39880.1 68417.m05650 ribosomal protein L23 family protein co... 33 0.15
At1g10530.1 68414.m01186 expressed protein 33 0.15
At2g30950.1 68415.m03775 FtsH protease (VAR2) identical to zinc ... 29 2.4
At2g45160.1 68415.m05622 scarecrow transcription factor family p... 29 4.2
At1g06430.1 68414.m00680 FtsH protease, putative similar to zinc... 29 4.2
At5g53170.1 68418.m06610 FtsH protease, putative similar to ATP-... 28 7.4
At5g09530.1 68418.m01103 hydroxyproline-rich glycoprotein family... 28 7.4
At3g52100.1 68416.m05717 PHD finger family protein contains Pfam... 28 7.4
At4g17330.1 68417.m02600 agenet domain-containing protein contai... 27 9.8
>At3g55280.1 68416.m06139 60S ribosomal protein L23A (RPL23aB)
various ribosomal L23a proteins
Length = 154
Score = 84.6 bits (200), Expect = 6e-17
Identities = 42/80 (52%), Positives = 53/80 (66%), Gaps = 1/80 (1%)
Frame = -2
Query: 489 KVVKPVTKALKAQRKVVKGEHGKR-VRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRM 313
K P KALKA + V G+ K+ +KIR V F RPKT PR PKYP+ S RN++
Sbjct: 10 KKADPKAKALKAAKAVKSGQIVKKPAKKIRTKVTFHRPKTLTVPRKPKYPKISATPRNKL 69
Query: 312 DAYNIIKFPLTSEAAMKKIE 253
D Y I+K+PLT+E+AMKKIE
Sbjct: 70 DHYQILKYPLTTESAMKKIE 89
Score = 71.7 bits (168), Expect = 5e-13
Identities = 39/65 (60%), Positives = 41/65 (63%)
Frame = -1
Query: 253 DNNTLVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRPDGKKKXXXXXXXXXXXXXXAN 74
DNNTLVFIV A+K IK AVKK+YDI KVNTLIRPDG KK AN
Sbjct: 90 DNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVAN 149
Query: 73 KIGII 59
KIGII
Sbjct: 150 KIGII 154
>At2g39460.1 68415.m04843 60S ribosomal protein L23A (RPL23aA)
identical to GB:AF034694
Length = 154
Score = 81.0 bits (191), Expect = 7e-16
Identities = 41/80 (51%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Frame = -2
Query: 489 KVVKPVTKALKAQRKVVKGE-HGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRM 313
K P KALKA + V G+ K+ +KIR V F RPKT PR KYP+ S RN++
Sbjct: 10 KKADPKAKALKAAKAVKSGQAFKKKDKKIRTKVTFHRPKTLTKPRTGKYPKISATPRNKL 69
Query: 312 DAYNIIKFPLTSEAAMKKIE 253
D Y I+K+PLT+E+AMKKIE
Sbjct: 70 DHYQILKYPLTTESAMKKIE 89
Score = 71.7 bits (168), Expect = 5e-13
Identities = 39/65 (60%), Positives = 41/65 (63%)
Frame = -1
Query: 253 DNNTLVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRPDGKKKXXXXXXXXXXXXXXAN 74
DNNTLVFIV A+K IK AVKK+YDI KVNTLIRPDG KK AN
Sbjct: 90 DNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVAN 149
Query: 73 KIGII 59
KIGII
Sbjct: 150 KIGII 154
>At4g39880.1 68417.m05650 ribosomal protein L23 family protein
contains Pfam profile PF00276: ribosomal protein L23
Length = 178
Score = 33.5 bits (73), Expect = 0.15
Identities = 18/33 (54%), Positives = 22/33 (66%)
Frame = -1
Query: 220 SANKHHIKAAVKKLYDINVAKVNTLIRPDGKKK 122
SA+K IK ++ LY +V KVNTL DGKKK
Sbjct: 38 SASKIEIKRVLESLYGFDVEKVNTL-NMDGKKK 69
>At1g10530.1 68414.m01186 expressed protein
Length = 166
Score = 33.5 bits (73), Expect = 0.15
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = -2
Query: 516 QKDGIKGQKKVVKPVTKALK-AQRKVVKGEHGKRVRKIRNSVHFRRPKTFEP 364
+K K +K ++ T A K + +KV + + GK+ R IRNS + KT+ P
Sbjct: 105 EKKSAKTKKHQIEKTTTAKKFSDKKVPEKKQGKQFRVIRNSTSLLKSKTWRP 156
>At2g30950.1 68415.m03775 FtsH protease (VAR2) identical to zinc
dependent protease VAR2 GI:7650138 from [Arabidopsis
thaliana]
Length = 695
Score = 29.5 bits (63), Expect = 2.4
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -2
Query: 243 PWSLLFTQVQTSTISRLQSRNSM 175
PWSL+ + Q+ I R+ +RNSM
Sbjct: 588 PWSLMDSSAQSDVIMRMMARNSM 610
>At2g45160.1 68415.m05622 scarecrow transcription factor family
protein
Length = 640
Score = 28.7 bits (61), Expect = 4.2
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Frame = -2
Query: 339 KSLPKRNRMDAYNIIKF---PLTSEAAMKK---IEITTPWSLLFTQVQTSTISRLQSRNS 178
+SL D +I +F P + MK+ IE + PW +LFTQ S S Q +
Sbjct: 541 ESLDANQNQDDSSIERFWVQPSIEKLLMKRHRWIERSPPWRILFTQCGFSPASLSQMAEA 600
Query: 177 MI*MLLKSTHSSGLMVRRKRT 115
LL+ G V ++++
Sbjct: 601 QAECLLQRNPVRGFHVEKRQS 621
>At1g06430.1 68414.m00680 FtsH protease, putative similar to zinc
dependent protease GI:7650138 from [Arabidopsis
thaliana]
Length = 685
Score = 28.7 bits (61), Expect = 4.2
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -2
Query: 243 PWSLLFTQVQTSTISRLQSRNSM 175
PWSL+ + Q+ I R+ +RNSM
Sbjct: 581 PWSLMDSSEQSDVIMRMMARNSM 603
>At5g53170.1 68418.m06610 FtsH protease, putative similar to
ATP-dependent metalloprotease FtsH1 GI:3600100 from [Mus
musculus]
Length = 806
Score = 27.9 bits (59), Expect = 7.4
Identities = 8/24 (33%), Positives = 16/24 (66%)
Frame = +2
Query: 500 LIPSFWASVQSSIWKLLAWVWQFW 571
L+ + WA+++ +I K++ W W W
Sbjct: 143 LMMALWAAIKRAIEKVMEWEWLSW 166
>At5g09530.1 68418.m01103 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 370
Score = 27.9 bits (59), Expect = 7.4
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = -2
Query: 381 PKTFEPPRHPKYPRKSLPKRNRMDAYNIIKFPLTSEAAMKKI-EITTP 241
PK FE P+ P++P+ LPK + K P + + K+ EI P
Sbjct: 52 PK-FEVPKLPEFPKPELPKLPEFPKPELPKIPEIPKPELPKVPEIPKP 98
>At3g52100.1 68416.m05717 PHD finger family protein contains Pfam
profile PF00628: PHD-finger
Length = 696
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = -2
Query: 582 GNSSQNCQT-QASSFQIEDCTEAQKDGIKGQKKVVKPVTKALKAQRKVVKGEHG 424
GN C T + S+Q++D +A ++ K + K + +LKA +VV G+ G
Sbjct: 343 GNLQYKCSTCRGESYQVKDLEDAVQEIWKRKDMADKDLIASLKASARVV-GQTG 395
>At4g17330.1 68417.m02600 agenet domain-containing protein contains
Pfam PF05641: Agenet domain
Length = 1058
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/49 (28%), Positives = 21/49 (42%)
Frame = -2
Query: 495 QKKVVKPVTKALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPK 349
+K+ VKPV + + + + I RPKTF+P PK
Sbjct: 870 RKEPVKPVRSIVPQNSGIGSWKMPSKTISIEKQTTISRPKTFKPAPKPK 918
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,510,278
Number of Sequences: 28952
Number of extensions: 242083
Number of successful extensions: 719
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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