Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30596
         (677 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    25   0.43 
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    22   5.3  
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    21   9.3  

>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 25.4 bits (53), Expect = 0.43
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = -1

Query: 509 IATIDLVKAFNQIPVFEDDIPKTAITTPFGLFEFPYMTIGLRNASRTFQNFVD 351
           ++TIDL  ++ QIP+  +    TA       + +  +  GL+ A  +F   +D
Sbjct: 391 MSTIDLRSSYWQIPLSPESRQYTAFLYNGRSYTYQVLPFGLKTAVGSFSRAMD 443


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 408 KLKKSKRGCYRCFWYIVF 461
           K+KK+KR CY  ++Y  F
Sbjct: 106 KIKKTKRYCY--YYYAFF 121


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = -3

Query: 660 LNSNFFTISLLPRVNCTHAFFLYI 589
           LN+  FT+  +    CTH  + ++
Sbjct: 34  LNNGKFTVEDIDPTLCTHLIYSFV 57


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,937
Number of Sequences: 336
Number of extensions: 2626
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17697850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)