Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30596
(677 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 35 0.012
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 35 0.012
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 35 0.012
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 35 0.012
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 35 0.012
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 35 0.012
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 35 0.012
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 35 0.012
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 33 0.029
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 33 0.029
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 33 0.029
SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit Sen2|Sc... 29 0.47
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe... 27 1.9
SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosacc... 27 2.5
SPAC19A8.03 |||phosphatidylinositol-3-phosphatase |Schizosacchar... 26 4.4
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch... 26 4.4
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch... 25 7.6
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 34.7 bits (76), Expect = 0.012
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = -1
Query: 500 IDLVKAFNQIPVFEDDIPKTAITTPFGLFEFPYMTIGLRNASRTFQNFVD 351
+DL A++ I V + D K A P G+FE+ M G+ A FQ F++
Sbjct: 501 LDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFIN 550
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 34.7 bits (76), Expect = 0.012
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = -1
Query: 500 IDLVKAFNQIPVFEDDIPKTAITTPFGLFEFPYMTIGLRNASRTFQNFVD 351
+DL A++ I V + D K A P G+FE+ M G+ A FQ F++
Sbjct: 501 LDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFIN 550
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 34.7 bits (76), Expect = 0.012
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = -1
Query: 500 IDLVKAFNQIPVFEDDIPKTAITTPFGLFEFPYMTIGLRNASRTFQNFVD 351
+DL A++ I V + D K A P G+FE+ M G+ A FQ F++
Sbjct: 501 LDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFIN 550
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 34.7 bits (76), Expect = 0.012
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = -1
Query: 500 IDLVKAFNQIPVFEDDIPKTAITTPFGLFEFPYMTIGLRNASRTFQNFVD 351
+DL A++ I V + D K A P G+FE+ M G+ A FQ F++
Sbjct: 501 LDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFIN 550
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 34.7 bits (76), Expect = 0.012
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = -1
Query: 500 IDLVKAFNQIPVFEDDIPKTAITTPFGLFEFPYMTIGLRNASRTFQNFVD 351
+DL A++ I V + D K A P G+FE+ M G+ A FQ F++
Sbjct: 501 LDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFIN 550
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 34.7 bits (76), Expect = 0.012
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = -1
Query: 500 IDLVKAFNQIPVFEDDIPKTAITTPFGLFEFPYMTIGLRNASRTFQNFVD 351
+DL A++ I V + D K A P G+FE+ M G+ A FQ F++
Sbjct: 501 LDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFIN 550
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 34.7 bits (76), Expect = 0.012
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = -1
Query: 500 IDLVKAFNQIPVFEDDIPKTAITTPFGLFEFPYMTIGLRNASRTFQNFVD 351
+DL A++ I V + D K A P G+FE+ M G+ A FQ F++
Sbjct: 501 LDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFIN 550
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 34.7 bits (76), Expect = 0.012
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = -1
Query: 500 IDLVKAFNQIPVFEDDIPKTAITTPFGLFEFPYMTIGLRNASRTFQNFVD 351
+DL A++ I V + D K A P G+FE+ M G+ A FQ F++
Sbjct: 501 LDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFIN 550
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 33.5 bits (73), Expect = 0.029
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = -1
Query: 500 IDLVKAFNQIPVFEDDIPKTAITTPFGLFEFPYMTIGLRNASRTFQNFVD 351
+DL A++ I V + D K A P G+FE+ M G+ A FQ F++
Sbjct: 501 LDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISIAPAHFQYFIN 550
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 33.5 bits (73), Expect = 0.029
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = -1
Query: 500 IDLVKAFNQIPVFEDDIPKTAITTPFGLFEFPYMTIGLRNASRTFQNFVD 351
+DL A++ I V + D K A P G+FE+ M G+ A FQ F++
Sbjct: 501 LDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISIAPAHFQYFIN 550
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 33.5 bits (73), Expect = 0.029
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = -1
Query: 500 IDLVKAFNQIPVFEDDIPKTAITTPFGLFEFPYMTIGLRNASRTFQNFVD 351
+DL A++ I V + D K A P G+FE+ M G+ A FQ F++
Sbjct: 501 LDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISIAPAHFQYFIN 550
>SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit
Sen2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 380
Score = 29.5 bits (63), Expect = 0.47
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -2
Query: 574 RSHHRFAITKTSRIAYP-PGYRVLLPSTWLKHLIKYLFLKTIYQKQ 440
++H + +AYP P + P TW+ ++ +YLF KT Q Q
Sbjct: 3 KNHEVYKDALPISLAYPLPPIILTNPLTWIPYIYRYLFRKTPRQVQ 48
>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 426
Score = 27.5 bits (58), Expect = 1.9
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -1
Query: 536 HSLPTWLSCIATIDLVKAFNQIPVFED 456
+ PTWLSC A + L+KAF + +D
Sbjct: 269 YDTPTWLSC-ARLPLLKAFKDVIGLKD 294
>SPAC12B10.03 |||WD repeat protein, human WDR20
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 543
Score = 27.1 bits (57), Expect = 2.5
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +2
Query: 221 GGTLAPTTPTKRSFFYKIN 277
G L P TP KR FF +IN
Sbjct: 42 GSPLDPNTPVKRLFFMRIN 60
>SPAC19A8.03 |||phosphatidylinositol-3-phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 559
Score = 26.2 bits (55), Expect = 4.4
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -2
Query: 556 AITKTSRIAYPPGYRVLLPSTWLKHLIKYL 467
A+ T A PP +L S+WLKHL L
Sbjct: 292 ALKNTDISAAPPLIELLNRSSWLKHLANIL 321
>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 677
Score = 26.2 bits (55), Expect = 4.4
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = -2
Query: 619 ELYTCFFSLYIFLFYRSHHRF-AITKTSRIAYP 524
++YTCF+SL F R H RF T+ YP
Sbjct: 248 QMYTCFYSL--FRRIREHARFRQATRDMNAMYP 278
>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 25.4 bits (53), Expect = 7.6
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = -2
Query: 301 RPVTVDDIIDLIEKTSFCGRR 239
+P T+ D+IDL ++TS+ R+
Sbjct: 148 QPTTISDMIDLTDETSYDPRK 168
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,343,551
Number of Sequences: 5004
Number of extensions: 42435
Number of successful extensions: 127
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -