Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30596
         (677 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U56964-6|AAB54035.1|  848|Caenorhabditis elegans Hypothetical pr...    42   5e-04
AF038608-10|AAC25814.2|  327|Caenorhabditis elegans Serpentine r...    29   2.3  
Z73969-8|CAA98239.1|  351|Caenorhabditis elegans Hypothetical pr...    28   7.0  

>U56964-6|AAB54035.1|  848|Caenorhabditis elegans Hypothetical
           protein F52E4.7 protein.
          Length = 848

 Score = 41.5 bits (93), Expect = 5e-04
 Identities = 17/31 (54%), Positives = 23/31 (74%)
 Frame = +2

Query: 5   LHRLYRTVEKHLSEEGGLLQVVWRAMQEEFI 97
           L +LY+ +EK+L     LLQVVWR MQE+F+
Sbjct: 779 LEQLYKKIEKNLVANSSLLQVVWRDMQEQFV 809



 Score = 33.9 bits (74), Expect = 0.11
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +3

Query: 132 CYPAAGLALPLSTDDILDALSDIARQH 212
           CYP + + L +STD +L   S+IA+QH
Sbjct: 822 CYPGSKIELEVSTDTVLQFFSEIAQQH 848


>AF038608-10|AAC25814.2|  327|Caenorhabditis elegans Serpentine
           receptor, class z protein78 protein.
          Length = 327

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = -1

Query: 635 HFYHV*IVHMLFFFIYIFVLSLAPSIRHNQDFAHSLPTWLSCIATIDLV 489
           HFYH+  +    F + I V+ LA    ++  F  SLP  L+ +  +  +
Sbjct: 64  HFYHMVNISYSLFVLLITVICLAGVAYYHLGFVRSLPEQLTFVILVTFI 112


>Z73969-8|CAA98239.1|  351|Caenorhabditis elegans Hypothetical
           protein C12D8.12 protein.
          Length = 351

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/58 (22%), Positives = 29/58 (50%)
 Frame = -1

Query: 617 IVHMLFFFIYIFVLSLAPSIRHNQDFAHSLPTWLSCIATIDLVKAFNQIPVFEDDIPK 444
           ++ ++  +I +F+L L P +  +  FAH +   +S    +D + +   I  + D + K
Sbjct: 255 LIPLIIMYIPLFILFLFPMLNIDLGFAHYVSISISLYPALDALPSILLIRDYRDSLIK 312


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,241,163
Number of Sequences: 27780
Number of extensions: 241280
Number of successful extensions: 715
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)