Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30596
         (677 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g04050.1 68418.m00386 maturase-related contains similarity to...    29   3.7  
At1g74170.1 68414.m08590 leucine-rich repeat family protein cont...    29   3.7  
At2g21070.1 68415.m02501 expressed protein                             27   8.6  
At2g16920.1 68415.m01949 ubiquitin-conjugating enzyme family pro...    27   8.6  
At2g02480.1 68415.m00187 DNA polymerase-related weak similarity ...    27   8.6  
At1g51470.1 68414.m05793 glycosyl hydrolase family 1 protein con...    27   8.6  

>At5g04050.1 68418.m00386 maturase-related contains similarity to
           maturase proteins from several species
          Length = 567

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 16/34 (47%), Positives = 18/34 (52%)
 Frame = -3

Query: 456 RYTKNSDNNPVWTF*VSVHDDWFTKR*SNFSELC 355
           RY KNS  NP W F VS   + F +R  N   LC
Sbjct: 173 RYLKNSVENPRWWFRVSFAREMFEER--NVDILC 204


>At1g74170.1 68414.m08590 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to Cf-2.2 [Lycopersicon
           pimpinellifolium] gi|1184077|gb|AAC15780
          Length = 1068

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
 Frame = +3

Query: 57  CCRWCGAPCRRSSSRTRRFAGARGWCY--PAAGLALPLSTDDI 179
           CC+W G  C R S R    A   G+    P   L+L    +D+
Sbjct: 65  CCQWMGVECNRKSGRITNIAFGIGFIIENPLLNLSLLHPFEDV 107


>At2g21070.1 68415.m02501 expressed protein 
          Length = 483

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +2

Query: 218 PGGTLAPTTPTKRSFFYKINDVIN 289
           P G L PT P + ++ + IND+++
Sbjct: 79  PDGQLCPTVPNRSNYIHWINDLLS 102


>At2g16920.1 68415.m01949 ubiquitin-conjugating enzyme family
           protein low similarity to ubiquitin-conjugating
           BIR-domain enzyme APOLLON [Homo sapiens] GI:8489831,
           ubiquitin-conjugating enzyme [Mus musculus] GI:3319990;
           contains Pfam profile PF00179: Ubiquitin-conjugating
           enzyme
          Length = 1102

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
 Frame = +1

Query: 490 TKSMVAIHDSQVGRLCAKS-WLWRIDGASDRTKIYIKKKSMCTI 618
           TK++  + D  VG       WL RID   D   +     SMC +
Sbjct: 186 TKNLKRVRDFAVGDYVVHGPWLGRIDDVLDNVTVLFDDGSMCKV 229


>At2g02480.1 68415.m00187 DNA polymerase-related weak similarity to
           DNA polymerase III holoenzyme tau subunit [Thermus
           thermophilus] GI:2583049
          Length = 1218

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/48 (27%), Positives = 19/48 (39%)
 Frame = +3

Query: 69  CGAPCRRSSSRTRRFAGARGWCYPAAGLALPLSTDDILDALSDIARQH 212
           CG PC  +    +   G R  C P+    L  +   IL     + R+H
Sbjct: 307 CGIPCYWTKKAMKHRGGCRSCCSPSFSDTLRRTGSSILCGSQSVYRRH 354


>At1g51470.1 68414.m05793 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
           similar to Myrosinase precursor (SP:P37702) [Arabidopsis
           thaliana]; similar to thioglucosidase (GI:871992)
           [Arabidopsis thaliana]
          Length = 511

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 580 FYRSHHRFAITKTSRIAYPPGYRVLL 503
           FYR+     +  +S + YPPG+R +L
Sbjct: 377 FYRNGSPIGVVASSFVYYPPGFRQIL 402


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,310,057
Number of Sequences: 28952
Number of extensions: 215706
Number of successful extensions: 641
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)