Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30595
         (774 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855493-1|ABH88180.1|  127|Tribolium castaneum chemosensory pro...    28   0.095
DQ855505-1|ABH88192.1|  119|Tribolium castaneum chemosensory pro...    26   0.38 
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   2.1  
DQ855499-1|ABH88186.1|  124|Tribolium castaneum chemosensory pro...    22   4.7  
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    21   8.3  

>DQ855493-1|ABH88180.1|  127|Tribolium castaneum chemosensory
           protein 7 protein.
          Length = 127

 Score = 27.9 bits (59), Expect = 0.095
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +1

Query: 28  ALRSICTKCQRNSLERIAKL*QLDSAKKMLNWKKIKKQ 141
           AL S CTKC +   E   K+ +  + K+  +W+++ K+
Sbjct: 69  ALSSGCTKCNQKQKETAEKVIRHLTQKRARDWERLSKK 106


>DQ855505-1|ABH88192.1|  119|Tribolium castaneum chemosensory
           protein 19 protein.
          Length = 119

 Score = 25.8 bits (54), Expect = 0.38
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +1

Query: 28  ALRSICTKCQRNSLERIAKL*QLDSAKKMLNWKKI 132
           AL+S C KC     E   K+    S  K   WK++
Sbjct: 65  ALKSDCAKCSEKQKEMTKKVIHFLSHNKQQMWKEL 99


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 548  PSQPLNKSICHVLKPRTLRSGFLS 619
            P QP +K+ C  L  +T+R  ++S
Sbjct: 1100 PEQPPDKATCTTLTAQTIRVSWVS 1123


>DQ855499-1|ABH88186.1|  124|Tribolium castaneum chemosensory
           protein 13 protein.
          Length = 124

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +1

Query: 28  ALRSICTKCQRNSLERIAKL*QLDSAKKMLNWKKIKKQ 141
           AL++ C KC     E I K+      +K   W++++K+
Sbjct: 65  ALKNECAKCNDKHKEGIRKVIHYLVKQKPEWWEQLQKK 102


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -1

Query: 540 KSFFRMSIYFRLSLSIARASSTVCAN 463
           KSF R  I+ ++ L   + +S  C N
Sbjct: 54  KSFHRNEIHIKIVLMFFKEASLYCFN 79


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,443
Number of Sequences: 336
Number of extensions: 2418
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20857569
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)