Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30595
         (774 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr 2|...    68   1e-12
SPAC57A10.09c |||High-mobility group non-histone chromatin prote...    33   0.060
SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr 1|...    30   0.42 
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb...    27   3.0  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    27   3.9  
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p...    27   3.9  
SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein Cwf23|Schiz...    26   6.9  
SPAC1565.07c |||TATA binding protein interacting protein |Schizo...    26   6.9  

>SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 207

 Score = 68.1 bits (159), Expect = 1e-12
 Identities = 27/55 (49%), Positives = 40/55 (72%)
 Frame = +1

Query: 511 EVDRHPEKRLKAAFTAFEQINLPRLKAENPSLRLSQLKELLKKEWHKSPQNPLNQ 675
           ++DRHPE+R KAA T ++Q  LP L+ E P LRL+Q ++++ KE+ K P NP N+
Sbjct: 124 KIDRHPERRFKAALTEYKQSRLPELRKEQPGLRLNQYEDIMYKEFQKHPDNPFNK 178


>SPAC57A10.09c |||High-mobility group non-histone chromatin
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 32.7 bits (71), Expect = 0.060
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +1

Query: 517 DRHPEKRLKAAFTAFEQINLPRLKAENPSLRLSQLKELLKKEW 645
           D +  KR  +AF  F   N  ++K +NP     QL  LL K W
Sbjct: 12  DPNTPKRNMSAFMFFSIENREKMKTDNPDATFGQLGSLLGKRW 54


>SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 29.9 bits (64), Expect = 0.42
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 550 FTAFEQINLPRLKAENPSLRLSQLKELLKKEWH 648
           F  F  I  P+LKAE  +L+   LK+ L+  W+
Sbjct: 202 FNHFSSIQKPKLKAEGSTLKGQALKKTLEDTWN 234


>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 331

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 31/119 (26%), Positives = 54/119 (45%), Gaps = 2/119 (1%)
 Frame = +2

Query: 347 SQAKEKMAKPETAKPVPSKVVIEEPPL-EENLNRIQLDGELAQTVDEALAILSDKRK*ID 523
           ++   + +KP   + VP + +  EPPL  E +    L GE           L D+    +
Sbjct: 83  NEPTSEASKPLLNELVPEEPLPREPPLPNEPVPEEPLPGEPP---------LPDEPVPEE 133

Query: 524 ILKNDLKQPSQPLNKSICHVLKPRTLRSGFLSSKNC*RKNGTNHHRT-PSIKGSELMRL 697
            L  +   P++P+ ++ CH   P +  +   +SKN    + TN ++  PSI  SE  R+
Sbjct: 134 PLPGEPPLPNEPVPETNCHKESPLSDETVSETSKNDTSNSPTNENQAQPSIAWSEGHRI 192


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 591 REPFAQAFSAQRTAKERMAQITTEPP 668
           R PF  A SAQ  A  R + ++T PP
Sbjct: 884 RSPFPGASSAQPAAMSRTSSVSTLPP 909


>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 584

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 10/45 (22%), Positives = 22/45 (48%)
 Frame = +3

Query: 9   SFYLVPRTSQYLHKMPKKFTGENSKAVAARQRKENAKLEKDQKTK 143
           +FY+  + +   H  P+K T         R+RK+  + + +++ K
Sbjct: 140 AFYIAQQVAAIEHPPPRKMTSSEKTRSENRERKKRWREQNEERNK 184


>SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein
           Cwf23|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 289

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = +1

Query: 508 AEVDRHPEKRLKAAFTAFEQINLPRLKAENPSLRLSQLKELLKKEWHKSPQNPLN 672
           A + R  E RL+      EQ    R K E PS ++S+L   ++  W +   + +N
Sbjct: 131 ANLRRQRENRLRE-----EQEQSKRRKQETPSSKISELDRSIRIRWKRKYADQVN 180


>SPAC1565.07c |||TATA binding protein interacting protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
 Frame = -1

Query: 225 FFLALPFSVVSS*VYHHYLPILHPLQLSLFFDLFPV*HFLCAVELL--QLCYSLQ*ISL 55
           FF  L     S  +YH  L  L P    L  D+F      C  EL+  + CY L  +SL
Sbjct: 144 FFAILCVVCDSLEIYHSNLSTLLPNNFELCIDVFQKCTTQCQRELIIKKACYLLSDVSL 202


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,533,228
Number of Sequences: 5004
Number of extensions: 43062
Number of successful extensions: 168
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)