Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30595
(774 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0791 + 28088237-28088809,28089311-28089430,28089585-280896... 76 3e-14
03_01_0226 + 1795120-1795686,1796040-1796171 71 1e-12
10_08_0583 - 18952168-18952263,18953663-18953740,18954006-189540... 30 2.3
02_05_0104 - 25858414-25858509,25858711-25858782,25859081-258591... 29 3.1
05_01_0562 + 4907937-4907990,4908890-4909075,4909180-4909285,490... 29 4.1
07_02_0028 + 11964941-11964991,11965259-11966101,11966249-119665... 28 7.2
12_02_1152 + 26515422-26515460,26516317-26516454,26518647-265188... 28 9.5
>04_04_0791 +
28088237-28088809,28089311-28089430,28089585-28089662,
28089808-28089938,28090390-28090435,28090529-28090636
Length = 351
Score = 76.2 bits (179), Expect = 3e-14
Identities = 32/53 (60%), Positives = 41/53 (77%)
Frame = +1
Query: 517 DRHPEKRLKAAFTAFEQINLPRLKAENPSLRLSQLKELLKKEWHKSPQNPLNQ 675
D+HPE+RLKA+F AFE+ LP+LK E P L L+Q K+++ K W KSP NPLNQ
Sbjct: 179 DKHPERRLKASFKAFEEAELPKLKEEKPGLTLNQYKDMIWKLWKKSPDNPLNQ 231
Score = 36.7 bits (81), Expect = 0.020
Identities = 17/41 (41%), Positives = 27/41 (65%)
Frame = +3
Query: 51 MPKKFTGENSKAVAARQRKENAKLEKDQKTKKAVEDAEWED 173
MPKK G NSKA AAR+R+ A+ ++ + ++A E+ W +
Sbjct: 1 MPKKM-GVNSKAEAARERRSVAEADRRDRVERAKEEEYWRE 40
>03_01_0226 + 1795120-1795686,1796040-1796171
Length = 232
Score = 70.5 bits (165), Expect = 1e-12
Identities = 30/53 (56%), Positives = 38/53 (71%)
Frame = +1
Query: 517 DRHPEKRLKAAFTAFEQINLPRLKAENPSLRLSQLKELLKKEWHKSPQNPLNQ 675
DRHPE+RLK ++ AFE+ L +LK E P L L Q K+++ K W KSP NPLNQ
Sbjct: 177 DRHPERRLKVSYKAFEEAELAKLKEEKPGLTLHQYKDMIWKLWKKSPDNPLNQ 229
Score = 36.7 bits (81), Expect = 0.020
Identities = 17/40 (42%), Positives = 27/40 (67%)
Frame = +3
Query: 51 MPKKFTGENSKAVAARQRKENAKLEKDQKTKKAVEDAEWE 170
MPKK G N+KA AAR+R+ A+ ++ + +A E+A W+
Sbjct: 1 MPKKM-GVNTKAEAARERRSAAEADRRDRDARAKEEAYWQ 39
>10_08_0583 -
18952168-18952263,18953663-18953740,18954006-18954081,
18954687-18954735,18955271-18955469,18955761-18955799,
18955800-18956123
Length = 286
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +1
Query: 508 AEVDRHPEKRLK--AAFTAFEQINLPRLKAENPSLRLSQLKELLKKEWHKSP 657
A ++R PEKR + +A+ F + + R+KA NP + + K W P
Sbjct: 183 AVINRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFP 234
>02_05_0104 -
25858414-25858509,25858711-25858782,25859081-25859156,
25859286-25859334,25859826-25860012,25860164-25860340,
25860519-25860632
Length = 256
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = +1
Query: 508 AEVDRHPEKRLK--AAFTAFEQINLPRLKAENPSLRLSQLKELLKKEWHKSP 657
A +R PEKR + +A+ F + + R+KA NP + + K W P
Sbjct: 155 ASANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFP 206
>05_01_0562 +
4907937-4907990,4908890-4909075,4909180-4909285,
4909377-4909513,4909989-4910072,4910157-4910248,
4910358-4910466,4910554-4910640,4910737-4910829,
4911384-4911581,4911659-4911810,4911910-4912060,
4912174-4912272,4912362-4912535,4912680-4912758,
4912858-4912979
Length = 640
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +1
Query: 517 DRHPEKRLKAAFTAFEQINLPRLKAENPSLRLSQLKELLKKEWHK 651
D + KR A F F + LK NP L +++ + L + W K
Sbjct: 554 DPNAPKRAIAPFMYFSKAERANLKNSNPELATTEIAKKLGERWQK 598
>07_02_0028 +
11964941-11964991,11965259-11966101,11966249-11966560,
11966640-11967073,11967500-11967941
Length = 693
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/57 (26%), Positives = 32/57 (56%)
Frame = +2
Query: 344 ISQAKEKMAKPETAKPVPSKVVIEEPPLEENLNRIQLDGELAQTVDEALAILSDKRK 514
++ A +K AK + KP K + + P L+ + + + ++ + VD+A+A +SD +
Sbjct: 471 LALAPKKKAKFKKTKPT-DKPIDDLPALDPTIEQALDEEDIGEDVDQAVAEMSDTER 526
>12_02_1152 +
26515422-26515460,26516317-26516454,26518647-26518809,
26519165-26519213,26519315-26519390,26520348-26520473
Length = 196
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = +1
Query: 520 RHPEKRLK--AAFTAFEQINLPRLKAENPSLRLSQLKELLKKEWHKSP 657
R PEKR + +A+ F + + R+KA NP + + K W P
Sbjct: 113 RPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHYP 160
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,904,698
Number of Sequences: 37544
Number of extensions: 260148
Number of successful extensions: 797
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -