Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30595
(774 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_3834| Best HMM Match : DUF1014 (HMM E-Value=2.4e-18) 88 9e-18
SB_3809| Best HMM Match : DUF1014 (HMM E-Value=8.7e-09) 44 2e-04
SB_9550| Best HMM Match : GPS (HMM E-Value=1.6e-11) 35 0.084
SB_43027| Best HMM Match : U79_P34 (HMM E-Value=0.066) 33 0.26
SB_25642| Best HMM Match : HMG_box (HMM E-Value=1.3e-29) 32 0.59
SB_10678| Best HMM Match : HMG_box (HMM E-Value=1.3e-29) 32 0.59
SB_41131| Best HMM Match : HMG_box (HMM E-Value=4.1e-28) 30 2.4
SB_23680| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_24447| Best HMM Match : TolA (HMM E-Value=1.3) 29 4.2
SB_21151| Best HMM Match : AAA_2 (HMM E-Value=0) 28 7.3
SB_14169| Best HMM Match : YTH (HMM E-Value=0.00023) 28 9.6
>SB_3834| Best HMM Match : DUF1014 (HMM E-Value=2.4e-18)
Length = 170
Score = 87.8 bits (208), Expect = 9e-18
Identities = 36/54 (66%), Positives = 48/54 (88%)
Frame = +1
Query: 511 EVDRHPEKRLKAAFTAFEQINLPRLKAENPSLRLSQLKELLKKEWHKSPQNPLN 672
++++HPEKRLKAA+ FE+ LPRLK ENP+LRLSQLK++L+K+W KSP+NPLN
Sbjct: 107 KIEKHPEKRLKAAYAEFEERELPRLKQENPNLRLSQLKQMLRKDWMKSPENPLN 160
>SB_3809| Best HMM Match : DUF1014 (HMM E-Value=8.7e-09)
Length = 265
Score = 43.6 bits (98), Expect = 2e-04
Identities = 20/42 (47%), Positives = 27/42 (64%)
Frame = +3
Query: 51 MPKKFTGENSKAVAARQRKENAKLEKDQKTKKAVEDAEWEDN 176
MPKKF G NSKA AR RK + K + ++ ++ ED WED+
Sbjct: 25 MPKKFKGVNSKAEEARARKASNKSAEKERKEREEEDKLWEDD 66
>SB_9550| Best HMM Match : GPS (HMM E-Value=1.6e-11)
Length = 1771
Score = 34.7 bits (76), Expect = 0.084
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +3
Query: 27 RTSQYLHKMPKKFTGENSKAVAARQ-RKENAKLEKDQKTKKAVEDAE 164
+T ++ K K+F S+A A R+ KEN K E+ QKTKK DA+
Sbjct: 1241 KTDRWSLKRTKRFQNTKSEARAERKWLKENIKQEQYQKTKKKFPDAQ 1287
>SB_43027| Best HMM Match : U79_P34 (HMM E-Value=0.066)
Length = 443
Score = 33.1 bits (72), Expect = 0.26
Identities = 13/36 (36%), Positives = 26/36 (72%)
Frame = +2
Query: 341 QISQAKEKMAKPETAKPVPSKVVIEEPPLEENLNRI 448
Q++Q+++ MA+P +A+P P K+ ++ LE+ + RI
Sbjct: 352 QVAQSRQ-MARPSSARPAPPKIKKQQDELEDQVGRI 386
>SB_25642| Best HMM Match : HMG_box (HMM E-Value=1.3e-29)
Length = 267
Score = 31.9 bits (69), Expect = 0.59
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +1
Query: 532 KRLKAAFTAFEQINLPRLKAENPSLRLSQLKELLKKEWHK 651
KR AF + +L AENP L SQ+ ++L EW K
Sbjct: 8 KRPMNAFMIWSSKKRRQLAAENPKLHNSQISKMLGTEWRK 47
>SB_10678| Best HMM Match : HMG_box (HMM E-Value=1.3e-29)
Length = 494
Score = 31.9 bits (69), Expect = 0.59
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +1
Query: 532 KRLKAAFTAFEQINLPRLKAENPSLRLSQLKELLKKEWHK 651
KR AF + +L AENP L SQ+ ++L EW K
Sbjct: 8 KRPMNAFMIWSSKKRRQLAAENPKLHNSQISKMLGTEWRK 47
>SB_41131| Best HMM Match : HMG_box (HMM E-Value=4.1e-28)
Length = 245
Score = 29.9 bits (64), Expect = 2.4
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = +1
Query: 532 KRLKAAFTAFEQINLPRLKAENPSLRLSQLKELLKKEWHKSPQN 663
KR +F + + + ENP +R +++ ++L EW K P++
Sbjct: 11 KRPLNSFMVWAKEKRRAMNRENPKMRNAEISKILGDEWRKMPES 54
>SB_23680| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 548
Score = 29.5 bits (63), Expect = 3.2
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +1
Query: 532 KRLKAAFTAFEQINLPRLKAENPSLRLSQLKELLKKEW 645
KR AF F Q ++K ENP L+ +++++ L +W
Sbjct: 307 KRPTPAFFRFRQDYADKVKEENPHLKDAEIRKHLSDQW 344
>SB_24447| Best HMM Match : TolA (HMM E-Value=1.3)
Length = 325
Score = 29.1 bits (62), Expect = 4.2
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +3
Query: 48 KMPKKFTGENSKAVAARQRKENAKLEKDQKTKKAVEDAEWEDN 176
K+ K+F K A +KE + E D++ KK + DA E N
Sbjct: 188 KLAKEFQKNKKKYAAEIDKKEKERKEIDKQIKKIIADAIAEAN 230
>SB_21151| Best HMM Match : AAA_2 (HMM E-Value=0)
Length = 373
Score = 28.3 bits (60), Expect = 7.3
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Frame = +3
Query: 6 ISFYLVPRTSQYLHKMPKKFTGENSKAVAARQRKENAKLEKDQKT-KKAVEDA--EWEDN 176
I+ +VP+ L + +KAV+ ++ +E AKL D+K + A+E A +WE++
Sbjct: 106 ITNIVVPQQVLALEAELENIRANKNKAVSGQKYEEAAKLRDDEKNMEAALESAQKQWEED 165
>SB_14169| Best HMM Match : YTH (HMM E-Value=0.00023)
Length = 906
Score = 27.9 bits (59), Expect = 9.6
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +3
Query: 51 MPKKFTGENSKAVAARQRKENAKLEKDQKTKKAVEDAEWED 173
+P + T S + A Q + K +D +TKKAV+D + E+
Sbjct: 526 IPSETTKPESLSEIAMQDTQTKKAVQDTQTKKAVQDIQAEN 566
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,553,782
Number of Sequences: 59808
Number of extensions: 311361
Number of successful extensions: 1260
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1259
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2107953584
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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