Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30595
         (774 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC013949-1|AAH13949.1|  223|Homo sapiens coiled-coil domain cont...    95   2e-19
L08048-1|AAA64970.1|  216|Homo sapiens HMG-1 protein.                  31   6.1  
AC007277-1|AAF19244.1|  191|Homo sapiens WUGSC:H_NH0244E06.1 pro...    30   8.0  

>BC013949-1|AAH13949.1|  223|Homo sapiens coiled-coil domain
           containing 124 protein.
          Length = 223

 Score = 95.1 bits (226), Expect = 2e-19
 Identities = 40/54 (74%), Positives = 49/54 (90%)
 Frame = +1

Query: 517 DRHPEKRLKAAFTAFEQINLPRLKAENPSLRLSQLKELLKKEWHKSPQNPLNQR 678
           DRHPE+R++AAFTAFE+  LPRLK ENP++RLSQLK+LLKKEW +SP NP+NQR
Sbjct: 162 DRHPERRMRAAFTAFEEAQLPRLKQENPNMRLSQLKQLLKKEWLRSPDNPMNQR 215



 Score = 53.2 bits (122), Expect = 1e-06
 Identities = 23/42 (54%), Positives = 30/42 (71%)
 Frame = +3

Query: 51  MPKKFTGENSKAVAARQRKENAKLEKDQKTKKAVEDAEWEDN 176
           MPKKF GEN+K+ AAR R+  AK   D K +K +EDA W+D+
Sbjct: 1   MPKKFQGENTKSAAARARRAEAKAAADAKKQKELEDAYWKDD 42



 Score = 33.1 bits (72), Expect = 1.1
 Identities = 20/45 (44%), Positives = 32/45 (71%), Gaps = 2/45 (4%)
 Frame = +2

Query: 374 PETAKPVPSKVVIEEPPLEENLNRIQL-DGEL-AQTVDEALAILS 502
           P+TA+   S +   E PLEEN+NR  L +G + A+T+++A+A+LS
Sbjct: 114 PDTAEKAKSHL---EVPLEENVNRRVLEEGSVEARTIEDAIAVLS 155


>L08048-1|AAA64970.1|  216|Homo sapiens HMG-1 protein.
          Length = 216

 Score = 30.7 bits (66), Expect = 6.1
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +1

Query: 517 DRHPEKRLKAAFTAFEQINLPRLKAENPSLRLSQLKELLKKEWHKS 654
           D +  KRL +AF  F     P++K E+P L +  + + L + W+ +
Sbjct: 91  DPNAPKRLPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNT 136


>AC007277-1|AAF19244.1|  191|Homo sapiens WUGSC:H_NH0244E06.1
           protein.
          Length = 191

 Score = 30.3 bits (65), Expect = 8.0
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +1

Query: 517 DRHPEKRLKAAFTAFEQINLPRLKAENPSLRLSQLKELLKKEWHKS 654
           D +  KR  +AF  F     P++K E+P L +S + + L + W+ +
Sbjct: 91  DSNAPKRPPSAFLLFCSEYCPKIKGEHPGLPISDVAKKLVEMWNNT 136


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,022,142
Number of Sequences: 237096
Number of extensions: 1474223
Number of successful extensions: 4509
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4494
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9367263024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)