BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV30595 (774 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AC025727-9|ABD63208.1| 146|Caenorhabditis elegans Hypothetical ... 86 3e-17 AC025727-8|AAG23390.2| 223|Caenorhabditis elegans Hypothetical ... 86 3e-17 U22831-3|AAK67237.1| 234|Caenorhabditis elegans Hmg protein 1.2... 36 0.042 U22831-2|AAK67238.1| 233|Caenorhabditis elegans Hmg protein 1.2... 36 0.042 U22831-1|AAK20071.1| 235|Caenorhabditis elegans Hmg protein 1.2... 36 0.042 AF056577-1|AAC78599.1| 235|Caenorhabditis elegans high mobility... 36 0.042 AC084159-2|AAK39359.1| 659|Caenorhabditis elegans Hypothetical ... 29 2.8 Z92775-4|CAB07163.4| 501|Caenorhabditis elegans Hypothetical pr... 29 4.9 Z54237-1|CAA90987.2| 445|Caenorhabditis elegans Hypothetical pr... 29 4.9 AL132895-5|CAC35863.3| 501|Caenorhabditis elegans Hypothetical ... 29 4.9 Z70266-3|CAA94207.1| 71|Caenorhabditis elegans Hypothetical pr... 28 6.4 Z70203-2|CAA94105.1| 685|Caenorhabditis elegans Hypothetical pr... 28 6.4 AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 28 6.4 AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 28 6.4 AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 28 6.4 AC006651-8|AAX22286.1| 716|Caenorhabditis elegans Hypothetical ... 28 6.4 AC006651-7|AAX22287.1| 786|Caenorhabditis elegans Hypothetical ... 28 6.4 AC006651-6|AAF39868.1| 833|Caenorhabditis elegans Hypothetical ... 28 6.4 Z46267-15|CAI79255.1| 1100|Caenorhabditis elegans Hypothetical p... 28 8.5 Z46267-14|CAI79254.1| 1030|Caenorhabditis elegans Hypothetical p... 28 8.5 Z46267-12|CAD45595.2| 528|Caenorhabditis elegans Hypothetical p... 28 8.5 Z46267-11|CAA86426.1| 611|Caenorhabditis elegans Hypothetical p... 28 8.5 Z46267-10|CAA86425.1| 581|Caenorhabditis elegans Hypothetical p... 28 8.5 Z46267-6|CAA86428.2| 1215|Caenorhabditis elegans Hypothetical pr... 28 8.5 >AC025727-9|ABD63208.1| 146|Caenorhabditis elegans Hypothetical protein Y73E7A.1b protein. Length = 146 Score = 85.8 bits (203), Expect = 3e-17 Identities = 35/55 (63%), Positives = 46/55 (83%) Frame = +1 Query: 517 DRHPEKRLKAAFTAFEQINLPRLKAENPSLRLSQLKELLKKEWHKSPQNPLNQRV 681 D+HPEKR++AA+ AFE+ LP LK +P+ RLSQLK++LKKEW KSP+NPLN R+ Sbjct: 87 DKHPEKRMRAAYLAFEEARLPELKLNHPTFRLSQLKQILKKEWQKSPENPLNARL 141 Score = 31.1 bits (67), Expect = 0.91 Identities = 14/45 (31%), Positives = 27/45 (60%) Frame = +2 Query: 377 ETAKPVPSKVVIEEPPLEENLNRIQLDGELAQTVDEALAILSDKR 511 E K K+ + L ENLN+++++ A+ VD+AL +L +++ Sbjct: 38 EKRKQEAQKIEVAGDLLVENLNKLEVEEGEARNVDDALKVLGEEK 82 >AC025727-8|AAG23390.2| 223|Caenorhabditis elegans Hypothetical protein Y73E7A.1a protein. Length = 223 Score = 85.8 bits (203), Expect = 3e-17 Identities = 35/55 (63%), Positives = 46/55 (83%) Frame = +1 Query: 517 DRHPEKRLKAAFTAFEQINLPRLKAENPSLRLSQLKELLKKEWHKSPQNPLNQRV 681 D+HPEKR++AA+ AFE+ LP LK +P+ RLSQLK++LKKEW KSP+NPLN R+ Sbjct: 164 DKHPEKRMRAAYLAFEEARLPELKLNHPTFRLSQLKQILKKEWQKSPENPLNARL 218 Score = 53.2 bits (122), Expect = 2e-07 Identities = 24/42 (57%), Positives = 27/42 (64%) Frame = +3 Query: 51 MPKKFTGENSKAVAARQRKENAKLEKDQKTKKAVEDAEWEDN 176 MPKKF EN K AAR RK AK ++ K KA EDA+W DN Sbjct: 1 MPKKFASENPKVTAARDRKATAKKDEADKKAKATEDAKWVDN 42 Score = 31.9 bits (69), Expect = 0.52 Identities = 24/102 (23%), Positives = 45/102 (44%), Gaps = 5/102 (4%) Frame = +2 Query: 221 KKTFRSITKES*AKALLEKELEXXXXXXXXXXXXXXXXRAQISQAKEKMAK-----PETA 385 KK ++ ++ + L E+E+ RA I KE + E Sbjct: 58 KKREEALRRKEENRKLAEEEMSSLGNKKPAGAATQKVTRAHIHIRKEDEERINRELEEKR 117 Query: 386 KPVPSKVVIEEPPLEENLNRIQLDGELAQTVDEALAILSDKR 511 K K+ + L ENLN+++++ A+ VD+AL +L +++ Sbjct: 118 KQEAQKIEVAGDLLVENLNKLEVEEGEARNVDDALKVLGEEK 159 >U22831-3|AAK67237.1| 234|Caenorhabditis elegans Hmg protein 1.2, isoform b protein. Length = 234 Score = 35.5 bits (78), Expect = 0.042 Identities = 17/51 (33%), Positives = 27/51 (52%) Frame = +1 Query: 508 AEVDRHPEKRLKAAFTAFEQINLPRLKAENPSLRLSQLKELLKKEWHKSPQ 660 A+ D H KR +AF + Q P ++A +P ++ Q+ + L K W PQ Sbjct: 127 AKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQ 177 >U22831-2|AAK67238.1| 233|Caenorhabditis elegans Hmg protein 1.2, isoform c protein. Length = 233 Score = 35.5 bits (78), Expect = 0.042 Identities = 17/51 (33%), Positives = 27/51 (52%) Frame = +1 Query: 508 AEVDRHPEKRLKAAFTAFEQINLPRLKAENPSLRLSQLKELLKKEWHKSPQ 660 A+ D H KR +AF + Q P ++A +P ++ Q+ + L K W PQ Sbjct: 126 AKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQ 176 >U22831-1|AAK20071.1| 235|Caenorhabditis elegans Hmg protein 1.2, isoform a protein. Length = 235 Score = 35.5 bits (78), Expect = 0.042 Identities = 17/51 (33%), Positives = 27/51 (52%) Frame = +1 Query: 508 AEVDRHPEKRLKAAFTAFEQINLPRLKAENPSLRLSQLKELLKKEWHKSPQ 660 A+ D H KR +AF + Q P ++A +P ++ Q+ + L K W PQ Sbjct: 128 AKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQ 178 >AF056577-1|AAC78599.1| 235|Caenorhabditis elegans high mobility group protein 1.2 protein. Length = 235 Score = 35.5 bits (78), Expect = 0.042 Identities = 17/51 (33%), Positives = 27/51 (52%) Frame = +1 Query: 508 AEVDRHPEKRLKAAFTAFEQINLPRLKAENPSLRLSQLKELLKKEWHKSPQ 660 A+ D H KR +AF + Q P ++A +P ++ Q+ + L K W PQ Sbjct: 128 AKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQ 178 >AC084159-2|AAK39359.1| 659|Caenorhabditis elegans Hypothetical protein Y73B3A.1 protein. Length = 659 Score = 29.5 bits (63), Expect = 2.8 Identities = 20/94 (21%), Positives = 45/94 (47%), Gaps = 1/94 (1%) Frame = +2 Query: 344 ISQAKEKMAK-PETAKPVPSKVVIEEPPLEENLNRIQLDGELAQTVDEALAILSDKRK*I 520 + +A+EK+ K P++ + P+K ++PPL++ ++ E +++ + ++ +K+ Sbjct: 455 VEKAEEKVEKKPKSPQKPPAKPTAQKPPLKKTEEVDGIEREASESSSKKSSVAPEKKNPK 514 Query: 521 DILKNDLKQPSQPLNKSICHVLKPRTLRSGFLSS 622 I + S K+ P R GF+ S Sbjct: 515 KIAFVEYNSRSSRKRKAGECSTPPAVTRRGFIPS 548 >Z92775-4|CAB07163.4| 501|Caenorhabditis elegans Hypothetical protein C06H5.6 protein. Length = 501 Score = 28.7 bits (61), Expect = 4.9 Identities = 14/45 (31%), Positives = 24/45 (53%) Frame = -1 Query: 513 FRLSLSIARASSTVCANSPSNCILFRFSSKGGSSMTTFEGTGLAV 379 F + L I+ A++ +CA +P+ I F G + T+F TG + Sbjct: 170 FLIPLYISVAANLICAAAPNYLIFLLFRFISGVATTSFSMTGFVL 214 >Z54237-1|CAA90987.2| 445|Caenorhabditis elegans Hypothetical protein T11B7.1 protein. Length = 445 Score = 28.7 bits (61), Expect = 4.9 Identities = 17/48 (35%), Positives = 26/48 (54%) Frame = +2 Query: 413 EEPPLEENLNRIQLDGELAQTVDEALAILSDKRK*IDILKNDLKQPSQ 556 EE +++ L IQL E Q+ + S K K I+ILK D+K+ + Sbjct: 181 EELSIDQKLKNIQLTCEGLQSAVGNFEMNSKKAKEIEILKMDIKKTQE 228 >AL132895-5|CAC35863.3| 501|Caenorhabditis elegans Hypothetical protein C06H5.6 protein. Length = 501 Score = 28.7 bits (61), Expect = 4.9 Identities = 14/45 (31%), Positives = 24/45 (53%) Frame = -1 Query: 513 FRLSLSIARASSTVCANSPSNCILFRFSSKGGSSMTTFEGTGLAV 379 F + L I+ A++ +CA +P+ I F G + T+F TG + Sbjct: 170 FLIPLYISVAANLICAAAPNYLIFLLFRFISGVATTSFSMTGFVL 214 >Z70266-3|CAA94207.1| 71|Caenorhabditis elegans Hypothetical protein C40C9.4 protein. Length = 71 Score = 28.3 bits (60), Expect = 6.4 Identities = 15/41 (36%), Positives = 22/41 (53%) Frame = +3 Query: 51 MPKKFTGENSKAVAARQRKENAKLEKDQKTKKAVEDAEWED 173 MP FT + +V Q +EN +L +QK K V+ +ED Sbjct: 1 MPPFFTEKLQGSVEELQNQENEELTIEQKKKAGVDQNYFED 41 >Z70203-2|CAA94105.1| 685|Caenorhabditis elegans Hypothetical protein C05G5.2 protein. Length = 685 Score = 28.3 bits (60), Expect = 6.4 Identities = 13/44 (29%), Positives = 24/44 (54%) Frame = +2 Query: 344 ISQAKEKMAKPETAKPVPSKVVIEEPPLEENLNRIQLDGELAQT 475 ++Q + + + E AKP + +EPP E +I L G+L ++ Sbjct: 584 VTQPEMEPSSSEPAKPAKPSITKKEPPSETMSAKISLIGDLQKS 627 >AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein protein. Length = 10578 Score = 28.3 bits (60), Expect = 6.4 Identities = 11/27 (40%), Positives = 18/27 (66%) Frame = +3 Query: 78 SKAVAARQRKENAKLEKDQKTKKAVED 158 S+ A + ++ +KLE + KTKK +ED Sbjct: 10044 SEIAAKKSAEQKSKLETEAKTKKVIED 10070 >AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein protein. Length = 18519 Score = 28.3 bits (60), Expect = 6.4 Identities = 11/27 (40%), Positives = 18/27 (66%) Frame = +3 Query: 78 SKAVAARQRKENAKLEKDQKTKKAVED 158 S+ A + ++ +KLE + KTKK +ED Sbjct: 10064 SEIAAKKSAEQKSKLETEAKTKKVIED 10090 >AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein protein. Length = 18534 Score = 28.3 bits (60), Expect = 6.4 Identities = 11/27 (40%), Positives = 18/27 (66%) Frame = +3 Query: 78 SKAVAARQRKENAKLEKDQKTKKAVED 158 S+ A + ++ +KLE + KTKK +ED Sbjct: 10064 SEIAAKKSAEQKSKLETEAKTKKVIED 10090 >AC006651-8|AAX22286.1| 716|Caenorhabditis elegans Hypothetical protein H06I04.3b protein. Length = 716 Score = 28.3 bits (60), Expect = 6.4 Identities = 20/64 (31%), Positives = 31/64 (48%) Frame = +2 Query: 413 EEPPLEENLNRIQLDGELAQTVDEALAILSDKRK*IDILKNDLKQPSQPLNKSICHVLKP 592 +E +EENL QL+ +DE +A S+ K LK+ + + K+ VLK Sbjct: 336 KEVEIEENLTEEQLEDRAMAEIDELIAKASEDE------KAALKKKKKKMLKAKARVLKR 389 Query: 593 RTLR 604 R L+ Sbjct: 390 RELK 393 >AC006651-7|AAX22287.1| 786|Caenorhabditis elegans Hypothetical protein H06I04.3c protein. Length = 786 Score = 28.3 bits (60), Expect = 6.4 Identities = 20/64 (31%), Positives = 31/64 (48%) Frame = +2 Query: 413 EEPPLEENLNRIQLDGELAQTVDEALAILSDKRK*IDILKNDLKQPSQPLNKSICHVLKP 592 +E +EENL QL+ +DE +A S+ K LK+ + + K+ VLK Sbjct: 336 KEVEIEENLTEEQLEDRAMAEIDELIAKASEDE------KAALKKKKKKMLKAKARVLKR 389 Query: 593 RTLR 604 R L+ Sbjct: 390 RELK 393 >AC006651-6|AAF39868.1| 833|Caenorhabditis elegans Hypothetical protein H06I04.3a protein. Length = 833 Score = 28.3 bits (60), Expect = 6.4 Identities = 20/64 (31%), Positives = 31/64 (48%) Frame = +2 Query: 413 EEPPLEENLNRIQLDGELAQTVDEALAILSDKRK*IDILKNDLKQPSQPLNKSICHVLKP 592 +E +EENL QL+ +DE +A S+ K LK+ + + K+ VLK Sbjct: 336 KEVEIEENLTEEQLEDRAMAEIDELIAKASEDE------KAALKKKKKKMLKAKARVLKR 389 Query: 593 RTLR 604 R L+ Sbjct: 390 RELK 393 >Z46267-15|CAI79255.1| 1100|Caenorhabditis elegans Hypothetical protein F49E2.5j protein. Length = 1100 Score = 27.9 bits (59), Expect = 8.5 Identities = 12/29 (41%), Positives = 20/29 (68%) Frame = +3 Query: 72 ENSKAVAARQRKENAKLEKDQKTKKAVED 158 + S AV + RK+N K +K +++KAVE+ Sbjct: 480 DESTAVTSENRKKNKKDKKKSESEKAVEE 508 >Z46267-14|CAI79254.1| 1030|Caenorhabditis elegans Hypothetical protein F49E2.5i protein. Length = 1030 Score = 27.9 bits (59), Expect = 8.5 Identities = 12/29 (41%), Positives = 20/29 (68%) Frame = +3 Query: 72 ENSKAVAARQRKENAKLEKDQKTKKAVED 158 + S AV + RK+N K +K +++KAVE+ Sbjct: 480 DESTAVTSENRKKNKKDKKKSESEKAVEE 508 >Z46267-12|CAD45595.2| 528|Caenorhabditis elegans Hypothetical protein F49E2.5g protein. Length = 528 Score = 27.9 bits (59), Expect = 8.5 Identities = 12/29 (41%), Positives = 20/29 (68%) Frame = +3 Query: 72 ENSKAVAARQRKENAKLEKDQKTKKAVED 158 + S AV + RK+N K +K +++KAVE+ Sbjct: 397 DESTAVTSENRKKNKKDKKKSESEKAVEE 425 >Z46267-11|CAA86426.1| 611|Caenorhabditis elegans Hypothetical protein F49E2.5f protein. Length = 611 Score = 27.9 bits (59), Expect = 8.5 Identities = 12/29 (41%), Positives = 20/29 (68%) Frame = +3 Query: 72 ENSKAVAARQRKENAKLEKDQKTKKAVED 158 + S AV + RK+N K +K +++KAVE+ Sbjct: 480 DESTAVTSENRKKNKKDKKKSESEKAVEE 508 >Z46267-10|CAA86425.1| 581|Caenorhabditis elegans Hypothetical protein F49E2.5e protein. Length = 581 Score = 27.9 bits (59), Expect = 8.5 Identities = 12/29 (41%), Positives = 20/29 (68%) Frame = +3 Query: 72 ENSKAVAARQRKENAKLEKDQKTKKAVED 158 + S AV + RK+N K +K +++KAVE+ Sbjct: 480 DESTAVTSENRKKNKKDKKKSESEKAVEE 508 >Z46267-6|CAA86428.2| 1215|Caenorhabditis elegans Hypothetical protein F49E2.5a protein. Length = 1215 Score = 27.9 bits (59), Expect = 8.5 Identities = 12/29 (41%), Positives = 20/29 (68%) Frame = +3 Query: 72 ENSKAVAARQRKENAKLEKDQKTKKAVED 158 + S AV + RK+N K +K +++KAVE+ Sbjct: 480 DESTAVTSENRKKNKKDKKKSESEKAVEE 508 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,016,144 Number of Sequences: 27780 Number of extensions: 239775 Number of successful extensions: 958 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 876 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 958 length of database: 12,740,198 effective HSP length: 80 effective length of database: 10,517,798 effective search space used: 1861650246 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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