Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30595
         (774 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g16210.1 68414.m01941 expressed protein ESTs gb|T04357 and gb...    81   8e-16
At1g23420.1 68414.m02934 inner no outer protein (INO) identical ...    36   0.030
At2g21800.1 68415.m02591 expressed protein                             31   0.64 
At2g20590.2 68415.m02408 reticulon family protein non-consensus ...    31   0.85 
At2g20590.1 68415.m02407 reticulon family protein non-consensus ...    31   0.85 
At4g03030.1 68417.m00411 kelch repeat-containing F-box family pr...    31   1.1  
At2g26580.2 68415.m03189 plant-specific transcription factor YAB...    30   1.5  
At2g26580.1 68415.m03188 plant-specific transcription factor YAB...    30   1.5  
At2g45190.1 68415.m05627 axial regulator YABBY1 (YABBY1) / abnor...    29   2.6  
At3g28730.1 68416.m03587 structure-specific recognition protein ...    29   4.5  
At1g69180.1 68414.m07917 transcription factor CRC (CRABS CLAW) i...    28   6.0  
At5g16340.1 68418.m01910 AMP-binding protein, putative similar t...    28   7.9  
At4g00180.1 68417.m00019 axial regulator YABBY3 (YABBY3) identic...    28   7.9  

>At1g16210.1 68414.m01941 expressed protein ESTs gb|T04357 and
           gb|AA595092 come from this gene
          Length = 234

 Score = 81.0 bits (191), Expect = 8e-16
 Identities = 35/54 (64%), Positives = 43/54 (79%)
 Frame = +1

Query: 514 VDRHPEKRLKAAFTAFEQINLPRLKAENPSLRLSQLKELLKKEWHKSPQNPLNQ 675
           VDRHPEKRLKA+F A+E++ LPRLK+E P L  +Q K+L+ K W KSP NPLNQ
Sbjct: 173 VDRHPEKRLKASFKAYEEVELPRLKSEKPGLTHTQYKDLIWKMWKKSPDNPLNQ 226



 Score = 32.3 bits (70), Expect = 0.37
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +3

Query: 51  MPKKFTGENSKAVAARQRKENAKLEKDQKTKKAVEDAEWED 173
           MPKK  G NSKA  A+ RK  A+ E+  +  +  E+  W +
Sbjct: 1   MPKKM-GLNSKAEVAKSRKNAAEAEQKDRQTREKEEQYWRE 40


>At1g23420.1 68414.m02934 inner no outer protein (INO) identical to
           INNER NO OUTER (INO) [Arabidopsis thaliana] GI:6684816
          Length = 231

 Score = 35.9 bits (79), Expect = 0.030
 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = +1

Query: 514 VDRHPEKRLKA--AFTAFEQINLPRLKAENPSLRLSQLKELLKKEWHKSP 657
           V++ PEKR +A  A+  F +  + RLKA+NPS+   +   L  K W   P
Sbjct: 128 VNKPPEKRQRAPSAYNCFIKEEIRRLKAQNPSMAHKEAFSLAAKNWAHFP 177


>At2g21800.1 68415.m02591 expressed protein
          Length = 475

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = +3

Query: 30  TSQYLHKMPKKFTGENSKAVAARQRKENAKLEKDQKTKKAVEDAE 164
           TS     +PKK   ++ K  AA ++K   + EK QK     EDAE
Sbjct: 179 TSLSADSLPKKKMSKDEKTRAAEEKKLQKEQEKLQKAASKAEDAE 223


>At2g20590.2 68415.m02408 reticulon family protein non-consensus AA
           donor splice site at 46485 and non-consensus GG acceptor
           splice site at 46563, confirmed by Ceres cDNA 1885;
           contains Pfam profile PF02453: Reticulon
          Length = 323

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 17/62 (27%), Positives = 30/62 (48%)
 Frame = +2

Query: 374 PETAKPVPSKVVIEEPPLEENLNRIQLDGELAQTVDEALAILSDKRK*IDILKNDLKQPS 553
           P  + PVP + ++  PP     +R +L   L  T ++A+A++  + K     K+ L  P 
Sbjct: 39  PNPSSPVPLRDILLLPPSPLRKSRTRLSDRLEMTSEDAMAVVRKRGKGKGGQKSLLASPR 98

Query: 554 QP 559
            P
Sbjct: 99  NP 100


>At2g20590.1 68415.m02407 reticulon family protein non-consensus AA
           donor splice site at 46485 and non-consensus GG acceptor
           splice site at 46563, confirmed by Ceres cDNA 1885;
           contains Pfam profile PF02453: Reticulon
          Length = 431

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 17/62 (27%), Positives = 30/62 (48%)
 Frame = +2

Query: 374 PETAKPVPSKVVIEEPPLEENLNRIQLDGELAQTVDEALAILSDKRK*IDILKNDLKQPS 553
           P  + PVP + ++  PP     +R +L   L  T ++A+A++  + K     K+ L  P 
Sbjct: 39  PNPSSPVPLRDILLLPPSPLRKSRTRLSDRLEMTSEDAMAVVRKRGKGKGGQKSLLASPR 98

Query: 554 QP 559
            P
Sbjct: 99  NP 100


>At4g03030.1 68417.m00411 kelch repeat-containing F-box family
           protein contains Pfam profiles PF01344: Kelch motif,
           PF00646: F-box domain
          Length = 442

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 19/77 (24%), Positives = 36/77 (46%)
 Frame = -1

Query: 585 KTWQIDLFKGCEGCFKSFFRMSIYFRLSLSIARASSTVCANSPSNCILFRFSSKGGSSMT 406
           +++ +D+       F+  F  S++ RLS  ++   S  CA  P +C      + GGS  T
Sbjct: 157 RSYPLDVPLPTSSVFRYSFVKSVWERLSPMMSPRGSFACAAMPGSCGRI-IVAGGGSRHT 215

Query: 405 TFEGTGLAVSGLAIFSL 355
            F   G  +S + ++ +
Sbjct: 216 LFGAAGSRMSSVEMYDV 232


>At2g26580.2 68415.m03189 plant-specific transcription factor YABBY
           family protein contains Pfam profile: PF04690 YABBY
           protein
          Length = 164

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = +1

Query: 514 VDRHPEKRLK--AAFTAFEQINLPRLKAENPSLRLSQLKELLKKEWHKSP 657
           V+R PEKR +  +A+  F +  + R+KA NP +   +      K W   P
Sbjct: 98  VNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 147


>At2g26580.1 68415.m03188 plant-specific transcription factor YABBY
           family protein contains Pfam profile: PF04690 YABBY
           protein
          Length = 164

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = +1

Query: 514 VDRHPEKRLK--AAFTAFEQINLPRLKAENPSLRLSQLKELLKKEWHKSP 657
           V+R PEKR +  +A+  F +  + R+KA NP +   +      K W   P
Sbjct: 98  VNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFP 147


>At2g45190.1 68415.m05627 axial regulator YABBY1 (YABBY1) / abnormal
           floral organs protein (AFO) / filamentous flower protein
           (FIL) identical to YABBY1 [Arabidopsis thaliana]
           GI:4928749, abnormal floral organs protein (AFO)
           [Arabidopsis thaliana] GI:4322477; supporting cDNA
           gi|4322476|gb|AF087015.1|AF087015
          Length = 229

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = +1

Query: 514 VDRHPEKRLK--AAFTAFEQINLPRLKAENPSLRLSQLKELLKKEWHKSP 657
           V+R PEKR +  +A+  F +  + R+KA NP +   +      K W   P
Sbjct: 134 VNRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFP 183


>At3g28730.1 68416.m03587 structure-specific recognition protein 1 /
           high mobility group protein / HMG protein nearly
           identical to SP|Q05153 Structure-specific recognition
           protein 1 homolog (HMG protein) {Arabidopsis thaliana};
           contains Pfam profile PF00505: HMG (high mobility group)
           box; contains Pfam profile PF03531: Structure-specific
           recognition protein
          Length = 646

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/45 (24%), Positives = 23/45 (51%)
 Frame = +1

Query: 517 DRHPEKRLKAAFTAFEQINLPRLKAENPSLRLSQLKELLKKEWHK 651
           D +  KR  + F  F Q+    +K E+P +   ++ ++L  +W +
Sbjct: 558 DPNAPKRAMSGFMFFSQMERDNIKKEHPGIAFGEVGKVLGDKWRQ 602


>At1g69180.1 68414.m07917 transcription factor CRC (CRABS CLAW)
           identical to transcription factor CRC (CRABS CLAW)
           GI:4836698 [Arabidopsis thaliana]
          Length = 181

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = +1

Query: 514 VDRHPEK--RLKAAFTAFEQINLPRLKAENPSLRLSQLKELLKKEWHK-SPQNP 666
           V + PEK  RL +A+  F +  + R+K+ NP +   +      K W K  P +P
Sbjct: 108 VVKPPEKKQRLPSAYNRFMRDEIQRIKSANPEIPHREAFSAAAKNWAKYIPNSP 161


>At5g16340.1 68418.m01910 AMP-binding protein, putative similar to
           AMP-binding protein GI:1903034 from [Brassica napus];
           contains Pfam AMP-binding domain PF00501; identical to
           adenosine monophosphate binding protein 6 AMPBP6
           (AMPBP6) GI:20799720
          Length = 550

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +3

Query: 15  YLVPRTSQYLHKMPKKFTGENSKAV 89
           Y+VP+T  ++ ++PK  TG+ +K V
Sbjct: 512 YMVPKTVSFMDELPKSSTGKVTKFV 536


>At4g00180.1 68417.m00019 axial regulator YABBY3 (YABBY3) identical
           to YABBY3 [Arabidopsis thaliana] GI:4928753
          Length = 240

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +1

Query: 517 DRHPEKRLK--AAFTAFEQINLPRLKAENPSLRLSQLKELLKKEWHKSP 657
           +R PEKR +  +A+  F +  + R+KA NP +   +      K W   P
Sbjct: 147 NRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFP 195


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,216,984
Number of Sequences: 28952
Number of extensions: 225297
Number of successful extensions: 765
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1726528800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)