Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30594
         (762 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces...   140   3e-34
SPBC1604.07 |atp4||F0-ATPase subunit|Schizosaccharomyces pombe|c...    28   1.7  
SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr...    27   2.2  
SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|...    27   2.2  
SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces pomb...    27   2.2  
SPBC15D4.15 |pho2||4-nitrophenylphosphatase |Schizosaccharomyces...    26   5.1  
SPCC61.05 |||S. pombe specific multicopy membrane protein family...    25   8.9  

>SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 249

 Score =  140 bits (338), Expect = 3e-34
 Identities = 64/85 (75%), Positives = 72/85 (84%)
 Frame = +2

Query: 254 TVELYAEGVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKL 433
           TVELYAE V  RGLCA+AQ ESLRYKL+ GLAVRRA YGVLR++ME+GA+GCEVV+SGKL
Sbjct: 85  TVELYAEKVQNRGLCAVAQCESLRYKLLAGLAVRRAAYGVLRYVMEAGAKGCEVVISGKL 144

Query: 434 RGQRAKSMKFVDGLMIHSGDPCNDY 508
           R  RAKSMKF DG MIHSG P  D+
Sbjct: 145 RAARAKSMKFADGFMIHSGQPAVDF 169



 Score =  126 bits (304), Expect = 3e-30
 Identities = 63/81 (77%), Positives = 67/81 (82%)
 Frame = +3

Query: 9   AVNNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLG 188
           A   ISKKRKFV DGVF AELNEF TREL+E+GYSG EVRVTP RSEIII AT TQ VLG
Sbjct: 3   AAFTISKKRKFVADGVFYAELNEFFTRELSEEGYSGCEVRVTPSRSEIIIRATHTQDVLG 62

Query: 189 EKGRRIRELTSVVQKRFNIPE 251
           EKGRRIRELT++VQKRF   E
Sbjct: 63  EKGRRIRELTALVQKRFKFAE 83



 Score = 60.1 bits (139), Expect = 3e-10
 Identities = 31/61 (50%), Positives = 42/61 (68%)
 Frame = +1

Query: 490 RPLQ*LLNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLE 669
           +P    +++ATRHVLLRQGVLG+KVKIMLP   + K   KK  PD ++V +PK+E    +
Sbjct: 164 QPAVDFIDSATRHVLLRQGVLGVKVKIMLP---EPKTRQKKSLPDIVVVLDPKEEEPITK 220

Query: 670 P 672
           P
Sbjct: 221 P 221


>SPBC1604.07 |atp4||F0-ATPase subunit|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
 Frame = +1

Query: 85  LGSWPRTATPAWKCGSLPSARRSLLWP------PGHRVCSERKDAESVSSLP 222
           L S+P     AW+   LPS R+  L P      P  R+  ++K A  +SS+P
Sbjct: 8   LRSFPSVQRTAWQRLVLPSTRKFSLTPTTFDKTPSGRIPPDQKAANIISSVP 59


>SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 136

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 277 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 381
           GG   P RYRPG ++  +  R  + T  L+   PF
Sbjct: 34  GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68


>SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 136

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 277 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 381
           GG   P RYRPG ++  +  R  + T  L+   PF
Sbjct: 34  GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68


>SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 136

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 277 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 381
           GG   P RYRPG ++  +  R  + T  L+   PF
Sbjct: 34  GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68


>SPBC15D4.15 |pho2||4-nitrophenylphosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 298

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +1

Query: 235 DSTFQSNCRIVC*RGGYSWPLRYRPGRISKI 327
           DSTF +N + +   G  S+PL +  GR  KI
Sbjct: 187 DSTFPTNGKFLPGSGAISYPLIFSTGRQPKI 217


>SPCC61.05 |||S. pombe specific multicopy membrane protein family
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 469

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 7/15 (46%), Positives = 13/15 (86%)
 Frame = -2

Query: 263 ILQLLWNVESLLYYG 219
           +L+L+WN+ + +YYG
Sbjct: 339 LLKLIWNIYTFVYYG 353


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,055,714
Number of Sequences: 5004
Number of extensions: 63434
Number of successful extensions: 171
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)