Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30594
(762 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g35530.1 68418.m04226 40S ribosomal protein S3 (RPS3C) 146 1e-35
At3g53870.1 68416.m05951 40S ribosomal protein S3 (RPS3B) riboso... 144 7e-35
At2g31610.1 68415.m03862 40S ribosomal protein S3 (RPS3A) 144 7e-35
At3g06190.2 68416.m00712 speckle-type POZ protein-related simila... 33 0.21
At3g06190.1 68416.m00711 speckle-type POZ protein-related simila... 33 0.21
At2g27100.1 68415.m03256 C2H2 zinc-finger protein SERRATE (SE) i... 30 1.5
At1g09830.1 68414.m01105 phosphoribosylamine--glycine ligase (PU... 30 1.9
At3g42060.1 68416.m04315 myosin heavy chain-related 29 3.4
At5g19000.1 68418.m02257 speckle-type POZ protein-related contai... 29 4.5
At4g36190.1 68417.m05149 serine carboxypeptidase S28 family prot... 29 4.5
At1g64070.1 68414.m07258 disease resistance protein (TIR-NBS-LRR... 29 4.5
At2g25150.1 68415.m03008 transferase family protein similar to 1... 28 7.8
>At5g35530.1 68418.m04226 40S ribosomal protein S3 (RPS3C)
Length = 248
Score = 146 bits (354), Expect = 1e-35
Identities = 68/85 (80%), Positives = 75/85 (88%)
Frame = +2
Query: 254 TVELYAEGVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKL 433
+VELYAE VA RGLCAIAQAESLRYKL+GGLAVRRACYGVLRF+MESGA+GCEV+VSGKL
Sbjct: 83 SVELYAEKVANRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKL 142
Query: 434 RGQRAKSMKFVDGLMIHSGDPCNDY 508
R RAKSMKF DG M+ SG P +Y
Sbjct: 143 RAARAKSMKFKDGYMVSSGQPTKEY 167
Score = 135 bits (326), Expect = 3e-32
Identities = 66/77 (85%), Positives = 71/77 (92%)
Frame = +3
Query: 21 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 200
ISKKRKFV DGVF AELNE LTRELAEDGYSGVEVRVTP+R+EIII ATRTQ+VLGEKGR
Sbjct: 5 ISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGR 64
Query: 201 RIRELTSVVQKRFNIPE 251
RIRELTS+VQKRF P+
Sbjct: 65 RIRELTSLVQKRFKFPQ 81
Score = 75.8 bits (178), Expect = 3e-14
Identities = 33/65 (50%), Positives = 45/65 (69%)
Frame = +1
Query: 490 RPLQ*LLNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLE 669
+P + ++ A RHVLLRQGVLG+KVKIML WD +GK GP P PD +++ PK++ V +
Sbjct: 162 QPTKEYIDAAVRHVLLRQGVLGLKVKIMLDWDPKGKQGPMTPLPDVVIIHTPKEDDVYIA 221
Query: 670 PTSEV 684
P V
Sbjct: 222 PAQVV 226
>At3g53870.1 68416.m05951 40S ribosomal protein S3 (RPS3B) ribosomal
protein S3a - Xenopus laevis, PIR:R3XL3A
Length = 249
Score = 144 bits (348), Expect = 7e-35
Identities = 67/85 (78%), Positives = 74/85 (87%)
Frame = +2
Query: 254 TVELYAEGVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKL 433
+VELYAE V RGLCAIAQAESLRYKL+GGLAVRRACYGVLRF+MESGA+GCEV+VSGKL
Sbjct: 83 SVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKL 142
Query: 434 RGQRAKSMKFVDGLMIHSGDPCNDY 508
R RAKSMKF DG M+ SG P +Y
Sbjct: 143 RAARAKSMKFKDGYMVSSGQPTKEY 167
Score = 134 bits (324), Expect = 6e-32
Identities = 66/76 (86%), Positives = 70/76 (92%)
Frame = +3
Query: 21 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 200
ISKKRKFV DGVF AELNE LTRELAEDGYSGVEVRVTP+R+EIII ATRTQ+VLGEKGR
Sbjct: 5 ISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGR 64
Query: 201 RIRELTSVVQKRFNIP 248
RIRELTS+VQKRF P
Sbjct: 65 RIRELTSLVQKRFKFP 80
Score = 74.1 bits (174), Expect = 9e-14
Identities = 32/61 (52%), Positives = 44/61 (72%)
Frame = +1
Query: 490 RPLQ*LLNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLE 669
+P + +++A RHVLLRQGVLGIKVK+ML WD +G +GPK P PD +++ PK+E
Sbjct: 162 QPTKEYIDSAVRHVLLRQGVLGIKVKVMLDWDPKGISGPKTPLPDVVIIHSPKEEEAIYA 221
Query: 670 P 672
P
Sbjct: 222 P 222
>At2g31610.1 68415.m03862 40S ribosomal protein S3 (RPS3A)
Length = 250
Score = 144 bits (348), Expect = 7e-35
Identities = 67/85 (78%), Positives = 74/85 (87%)
Frame = +2
Query: 254 TVELYAEGVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKL 433
+VELYAE V RGLCAIAQAESLRYKL+GGLAVRRACYGVLRF+MESGA+GCEV+VSGKL
Sbjct: 83 SVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKL 142
Query: 434 RGQRAKSMKFVDGLMIHSGDPCNDY 508
R RAKSMKF DG M+ SG P +Y
Sbjct: 143 RAARAKSMKFKDGYMVSSGQPTKEY 167
Score = 134 bits (324), Expect = 6e-32
Identities = 66/76 (86%), Positives = 70/76 (92%)
Frame = +3
Query: 21 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 200
ISKKRKFV DGVF AELNE LTRELAEDGYSGVEVRVTP+R+EIII ATRTQ+VLGEKGR
Sbjct: 5 ISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGR 64
Query: 201 RIRELTSVVQKRFNIP 248
RIRELTS+VQKRF P
Sbjct: 65 RIRELTSLVQKRFKFP 80
Score = 77.4 bits (182), Expect = 1e-14
Identities = 35/61 (57%), Positives = 44/61 (72%)
Frame = +1
Query: 490 RPLQ*LLNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLE 669
+P + ++ A RHVLLRQGVLGIKVKIML WD GK+GPK P PD +++ PKD+ V
Sbjct: 162 QPTKEYIDAAVRHVLLRQGVLGIKVKIMLDWDPTGKSGPKTPLPDVVIIHAPKDDVVYSA 221
Query: 670 P 672
P
Sbjct: 222 P 222
>At3g06190.2 68416.m00712 speckle-type POZ protein-related similar
to SPOP (novel nuclear speckle-type protein)
(SP:O43791) [Homo sapiens]; contains Pfam PF00651 :
BTB/POZ domain; contains Pfam PF00917: MATH domain
Length = 295
Score = 33.1 bits (72), Expect = 0.21
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = -2
Query: 218 SELTDSASFLSEHTLCPGGHNNDLRADGSD 129
SEL + + LSEH+L GH +L ADG D
Sbjct: 255 SELLEYVARLSEHSLTSSGHRKELFADGCD 284
>At3g06190.1 68416.m00711 speckle-type POZ protein-related similar
to SPOP (novel nuclear speckle-type protein)
(SP:O43791) [Homo sapiens]; contains Pfam PF00651 :
BTB/POZ domain; contains Pfam PF00917: MATH domain
Length = 406
Score = 33.1 bits (72), Expect = 0.21
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = -2
Query: 218 SELTDSASFLSEHTLCPGGHNNDLRADGSD 129
SEL + + LSEH+L GH +L ADG D
Sbjct: 366 SELLEYVARLSEHSLTSSGHRKELFADGCD 395
>At2g27100.1 68415.m03256 C2H2 zinc-finger protein SERRATE (SE)
identical to C2H2 zinc-finger protein SERRATE
GI:14486602 from [Arabidopsis thaliana]
Length = 720
Score = 30.3 bits (65), Expect = 1.5
Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Frame = -2
Query: 296 KGHE*PPLQHTILQLLWNVESLLYYGSELTDSASFLSEHTLCPGGHNNDLRADGSDPHF- 120
KG E L T++ LW V L YYG T+ A L H G +D + D ++ F
Sbjct: 395 KGLEGVELLDTLVTYLWRVHGLDYYGKVETNEAKGL-RHVRAE-GKVSDAKGDENESKFD 452
Query: 119 -HAGVAVLGQLPSE 81
H + GQ P E
Sbjct: 453 SHWQERLKGQDPLE 466
>At1g09830.1 68414.m01105 phosphoribosylamine--glycine ligase (PUR2)
Identical to phosphoribosylamine--glycine ligase,
chloroplast [precursor] SP:P52420 from [Arabidopsis
thaliana]
Length = 532
Score = 29.9 bits (64), Expect = 1.9
Identities = 23/81 (28%), Positives = 36/81 (44%)
Frame = +2
Query: 230 EAIQHSRATVELYAEGVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGC 409
E IQ A + + A+G+A +A ++ + + V+ GV G+ GC
Sbjct: 228 EYIQEQGAPIVIKADGLAAGKGVTVAMELEEAFEAVDSMLVK----GVF------GSAGC 277
Query: 410 EVVVSGKLRGQRAKSMKFVDG 472
+VVV L G+ A VDG
Sbjct: 278 QVVVEEFLEGEEASFFALVDG 298
>At3g42060.1 68416.m04315 myosin heavy chain-related
Length = 712
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 232 SDSTFQSNCRIVC*RGGYSWP 294
SD+TF SN ++C R SWP
Sbjct: 335 SDNTFLSNLSLLCKRSALSWP 355
>At5g19000.1 68418.m02257 speckle-type POZ protein-related contains
Pfam PF00651 : BTB/POZ domain; contains Pfam PF00917:
MATH domain; similar to Speckle-type POZ protein
(SP:O43791) [Homo sapiens]
Length = 442
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -2
Query: 218 SELTDSASFLSEHTLCPGGHNNDLRADGSD 129
+EL + LSEH++ GH ++ ADG D
Sbjct: 402 TELLQYVARLSEHSVIVSGHRKEIFADGCD 431
>At4g36190.1 68417.m05149 serine carboxypeptidase S28 family protein
contains Pfam PF05577: Serine carboxypeptidase S28
Length = 493
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = +1
Query: 22 FQRSENLLEMGFSRQNSMSSSLGSWPRTATPAWKCGSLPSA 144
F RS N+ F S S +L +W R P CGSL S+
Sbjct: 161 FNRSSNVENPWFFFGVSYSGALSAWFRLKFPHLTCGSLASS 201
>At1g64070.1 68414.m07258 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 997
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = +2
Query: 227 TEAIQHSRATVELYAEGVATRGLCAIAQAESLRYKLIGGLAVRRACYGV 373
T+AI+ SR ++ L ++ A+ G C E L+ K G V YGV
Sbjct: 61 TQAIRESRISIVLLSKNYASSGWCLDELLEILKCKDDMGQIVMTVFYGV 109
>At2g25150.1 68415.m03008 transferase family protein similar to
10-deacetylbaccatin III-10-O-acetyl transferase
[gi:6746554], 2-debenzoyl-7,13-diacetylbaccatin
III-2-O-benzoyl transferase [gi:11559716] from Taxus
cuspidata; contains Pfam transferase family domain
PF00248; contains EST gb:R65039
Length = 461
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -2
Query: 149 LRADGSDPHFHAGVAVLGQLPSEELIEF 66
L+ SDP GV V+ +LP + ++EF
Sbjct: 418 LKPSKSDPSMEGGVKVIMKLPRDAMVEF 445
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,519,329
Number of Sequences: 28952
Number of extensions: 359836
Number of successful extensions: 1073
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1014
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1073
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1702303248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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